Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03815 atgTCTTCTTTATATTCAACTTGGATTACATCCTTTTCATGTTCACCTTCTTCAGGTGATGCATTACCTCAATGGTTGAGATTCATTTTCCTCTCACCATGTCCTCAAAGAGCTCTTCTTTCAGCCGTTGATGTTTTACTCTTGTTTACTCTATTAGTCTTTGCTATCATAAAGCTCTATTCAAGGTTTACTAGTTCCAATGGAACCAATACAGAAGAAATCAGTAAACCTTTAATCAGTAACATAAGATCTTTAAGAACAAGAACAACTCTATGGTATAAGCTAACTCTAATTGCAACGATTTTTGTATCGATGTTATACACAGTCGCTTGCATTTTAGTGTTTAGCAGTTCTAATATTGAATTATCATGGAAACAACTTGATGGACTATTTTGGGTTGTTCAAGCAATAACTCAATTAGTCCTTGTGATTTTAATCATCCATGTTAAAAGATTTGAAGCTGTTGTTTACCCTTTATCGCTTCGAATTTATTGGATTGCGAGTTTCGTTGTTGTTTCTTTGTTCACTGCTTCTGGTGTTATACGTTTGGTGTCTTTGGAGGGAAATAATTACTTCTTTAGCTTTCTGGTAGATGATGTCGTGTCTTTCGTTTCGCTACCTTTTTCgctttttttgctttttgttgGTGTTAAAGGTTCCACCGGTGTTATTAAGGCAAGAGGAGAATCCCAATTGGTTAATGATAATGGTGAAGAAACAAAACTAAATGGTCATGATGATCATGGTTTGTATAAACCAAATCTTACTACTGGTTTTGCCACAGCTTCTCAATTTTCTAAGACCTTTTGGATTTGGTTAAACCCTTTGTTGAGTAAAGGGTATGAGTCGCCGCTTAATATCAATGACGTTCCGCACGTTTCTCCACAACATAGAGCTGAGAGGATGTCTGTTATCTTTGAATCGAAATGGCCTAAATCGGATGAGAGATCGAAGCATCCGGTTAGAACCACGTTGATTCGGTGTTTCTGGAAAGATATAATCTTCACTGCTTTTCTTGCTGTTATTAGGCTATCTGTTATGTTTGTTGGACCTGTTTTAATTCAAGACTTTGTTGATTTCACTTCTGGAAAAGGTAGTTCTGTGTATGAAGGTTACTATTTGGTGCTGATTCTTCTTGTAGCCAAGTTTATTGAAGTTTTAACAACTCatcatttcaatttcaactctCAGAAACTTGGTATGCTTATAAGATGCACTCTCATTACTTCGTTGTATAAAAAGGGTTTGAGGCTGTCTGGTTCTGCAAGACAGGATCATGGTGTTGGTTCTATTGTGAATTACATGGCTGTTGATACTCAACAATTATCCGATATGATGCTTCAGTTACATGCCATATGGATGATGCCGTTTCAAGTTGGTATTAGTTTGTTTTTGCTTTACAATTGTCTCGGCGTTTCTGCGTTTACCGCACTTATTTGCCTTCTTCTTGTTATCGTGTTTATCATAGTGACAACTCGACAGAACAAAGGCTACCAGTTTCAAGCTATGATAAGCCGTGATTCGAGAATGAAAGCTGTGAATGAGATGCTTAATTACATGCGCGTGATTAAGTTTCAGGCATGGGAAGATCATTTCAACAGTAGAATCTTGAGTTTCCGTCAGGCGGAGTTTGGGTGGCTTTCGAAGTTTATGTACTCGATTTGTGGAAACATTATTGTGTTGTGGAGTTCTCCTATGTTGATATCAACACTTACTTTCGGTACCGCACTTTTGCTTGGAGTTCCACTTGATGCAGGAACTGTTTTCACTACAACAACTGTGTTTAAGATCCTGCAAGAGCCTATTAGGACTTTTCCTCAGTCCATGATTGCTCTTTCACAAGCATTGGTATCACTTGGGAGATTAGATAGGTACATGTCTAGCAGGGAACTGAGGGATGATTCAGTTGAGAGAAGTGAAGGTTGTGATGGAGTAACTGCTGTGGATGTTCAAGATGGTACCTTTACTTGGGATGATGATGGCCTAGAACAAGacttgaaaaatattaatttgaaggTTAACAAGGGAGAGCTCACAGCTATTGTTGGTACTGTTGGATCCGGAAAGTCTTCTCTTCTTGCATCAATTCTTGGTGAAATGCACAAAACTTCTGGAAAGGTTCAAGTTTGTGGGAGTGTTGCTTATGTTGCACAAACGTCTTGGATTCAAAACGGGACAATTGAAGAAAACATTCTGTTCGGTTTACCAATGAACAGACAAAAGTACAATGAAGTTATCAGGGTTTGTTGCTTGGAGAAAGACTTAGAGATGATGGAATTTGGGGATCAGACAGAGATTGGAGAGCGTGGCATCAACCTCAGTGGAGGTCAGAAGCAGCGTATACAACTTGCTAGGGCTGTATACCAAGAGTGTGATATATATCTTCTTGATGATGTCTTCAGTGCAGTCGATGCACATACCGGCACTGAAATATTTAAGGAATGCGTGAGGGGAGCTTTGAAAGGCAAGACCATTGTTCTTGTAACACATCAAGTAGACTTCCTACATAATGTGGATCGTATTGTGGTGATGAGGGACGGAATGATAGTTCAATCAGGCCGGTACAATGACCTACTTGATTCTGGATTGGATTTTGGTGTTCTGGTAGCTGCACACGAGACATCTATGGAACTAGTAGAACAAGGCGCGGCCGTGCCTGGTGAAAATTCGAACAAACCGATAATATCTAAGTCAACGTCTAATAACAGCAGAGAAGCCAATGGCGAAAGTAATTCTCTTGACCAGCCTGATTCTGCTAAGGGAAGTTCTAAACTTGTCAAAGACGAGGAAAGAGAAACCGGGAAAGTTAGTTTTAATATCTATAAACTCTACTGCACTGAGGCTTTTGGATGGGCAGGCATTTCAGCAGTactctttctttcatttttgtGGCAAGCATCTATGATGGCTAGTGATTATTGGTTGGCATATGAAACCTCGGTCGAGCGTGCTGACGTTTTCAATCCTTCTCTGTTTATTTCCGTCTATGCAATTATCACCGTAGTTTCAGTTTTGCTGATAGTGTTGAGATCCTATTCTGTAACAATCTTTGGATTAAAGACAGCACAGATTTTCTTCACTCAAATTCTTAATAGCATCTTGCATGCTCCAATGGCATTCTACGACACTACTCCATCAGGGAGGATTCTAAGCAGGGCATCCACTGATCAGACCAATGTTGATATCTTCATCCCTTTGTTTATCAATTTTGTGGTGGCCATGTATATCACAGTGATCAGTATCTTCATAGTAACATGCCAGAATTCATGGCCAACAGCTTTCTTGTTGATTCCTCTTGTTTGGTTGAACATTTGGTATCGGGGTTATTTTCTCTCTACATCTCGTGAATTAACACGTCTGGATTCAATTACAAAAGCACCTGTGATTGTTCATTTCTCCGAAAGCATTTCCGGAGTCATGACAGTTCGCGCATTCAGAAAGCAGAAGGAATTTAGTTTAGAAAACATTAAACGAGTGAATTCTAATTTACGAATGGATTTTCACAACTTCAGTTCCAATGCATGGTTGGGTTTCCGCTTAGAATTGCTTGGAAGCTTAATTTTCTGCCTTTCTGCTTTGTTCATGGTCACACTACCCAGCAATATCATAAAGCCAGAAAATGTTGGTTTGTCTCTCTCTTATGGATTGTCGTTGAATTCGGTGCTGTTCTGGGCTATATACATGAGCTGTTTCATTGAAAACAAAATGGTATCGGTTGAAAGGATAAAACAGTTCTCAAATATTCCATCAGAAGCAGCATGGATCATTAAGGATCGTTCGCCTCCTCCAAATTGGCCCGGTCAAGGCCATGTTGATATCAAGGACTTGCAGGTTAGATATCGTCCAAACACTCCTTTGGTTCTTAAAGGAATTACTCTAAGCATTAACGGAGGAGAAAAGGTTGGTGTTGTTGGTCGAACGGGGAGTGGAAAATCAACTTTGATTCAAGTTTTCTTCAGACTGGTGGAACCAACCGGAGGGAAAATAATCATTGATGGAATTGACATATGTGCCTTAGGACTTCATGATCTCAGATCTCGATTCGGTATCATCCCTCAGGAGCCTGTCCTTTTCGAAGGAACCGTCAGAAGTAACATCGATCCAACTGGACAGTATACAGATGATGACATATGGAAGAGTTTGGATCGTTGTCAACTGAAAGATGCAGTGGCTTCAAAGCCTGAGAAACTTGACTCATTAGTGGTTGACAATGGAGATAACTGGAGTGTGGGACAAAGGCAGTTGCTTTGTTTAGGGAGAGTCATGCTTAAGCAAAGCAGGCTGTTGTTTATGGACGAAGCTACTGCTTCTGTCGATTCTCAAACCGATGCTGTAATTCAGAAGATCATTAGAGAGGATTTTGCTGCACGTACCATCATCAGCATTGCTCATAGGATACCAACAGTCATGGACTGCGATCGAGTGTTAGTTGTAGATGCAGGACGCGCGAAAGAATTTGACAAACCTTCGAACTTACTCCAGAGGCAATCGCTGTTTGGAGCTTTGGTTCAAGAGTATGCCAACCGTTCAGCTggactgtaa 4542 0.3948 MSSLYSTWITSFSCSPSSGDALPQWLRFIFLSPCPQRALLSAVDVLLLFTLLVFAIIKLYSRFTSSNGTNTEEISKPLISNIRSLRTRTTLWYKLTLIATIFVSMLYTVACILVFSSSNIELSWKQLDGLFWVVQAITQLVLVILIIHVKRFEAVVYPLSLRIYWIASFVVVSLFTASGVIRLVSLEGNNYFFSFLVDDVVSFVSLPFSLFLLFVGVKGSTGVIKARGESQLVNDNGEETKLNGHDDHGLYKPNLTTGFATASQFSKTFWIWLNPLLSKGYESPLNINDVPHVSPQHRAERMSVIFESKWPKSDERSKHPVRTTLIRCFWKDIIFTAFLAVIRLSVMFVGPVLIQDFVDFTSGKGSSVYEGYYLVLILLVAKFIEVLTTHHFNFNSQKLGMLIRCTLITSLYKKGLRLSGSARQDHGVGSIVNYMAVDTQQLSDMMLQLHAIWMMPFQVGISLFLLYNCLGVSAFTALICLLLVIVFIIVTTRQNKGYQFQAMISRDSRMKAVNEMLNYMRVIKFQAWEDHFNSRILSFRQAEFGWLSKFMYSICGNIIVLWSSPMLISTLTFGTALLLGVPLDAGTVFTTTTVFKILQEPIRTFPQSMIALSQALVSLGRLDRYMSSRELRDDSVERSEGCDGVTAVDVQDGTFTWDDDGLEQDLKNINLKVNKGELTAIVGTVGSGKSSLLASILGEMHKTSGKVQVCGSVAYVAQTSWIQNGTIEENILFGLPMNRQKYNEVIRVCCLEKDLEMMEFGDQTEIGERGINLSGGQKQRIQLARAVYQECDIYLLDDVFSAVDAHTGTEIFKECVRGALKGKTIVLVTHQVDFLHNVDRIVVMRDGMIVQSGRYNDLLDSGLDFGVLVAAHETSMELVEQGAAVPGENSNKPIISKSTSNNSREANGESNSLDQPDSAKGSSKLVKDEERETGKVSFNIYKLYCTEAFGWAGISAVLFLSFLWQASMMASDYWLAYETSVERADVFNPSLFISVYAIITVVSVLLIVLRSYSVTIFGLKTAQIFFTQILNSILHAPMAFYDTTPSGRILSRASTDQTNVDIFIPLFINFVVAMYITVISIFIVTCQNSWPTAFLLIPLVWLNIWYRGYFLSTSRELTRLDSITKAPVIVHFSESISGVMTVRAFRKQKEFSLENIKRVNSNLRMDFHNFSSNAWLGFRLELLGSLIFCLSALFMVTLPSNIIKPENVGLSLSYGLSLNSVLFWAIYMSCFIENKMVSVERIKQFSNIPSEAAWIIKDRSPPPNWPGQGHVDIKDLQVRYRPNTPLVLKGITLSINGGEKVGVVGRTGSGKSTLIQVFFRLVEPTGGKIIIDGIDICALGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTGQYTDDDIWKSLDRCQLKDAVASKPEKLDSLVVDNGDNWSVGQRQLLCLGRVMLKQSRLLFMDEATASVDSQTDAVIQKIIREDFAARTIISIAHRIPTVMDCDRVLVVDAGRAKEFDKPSNLLQRQSLFGALVQEYANRSAGL 1513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03815 1513 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 956 1234 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu01g03815 1513 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 83 1512 - -
Tsu01g03815 1513 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1271 1505 IPR003439 GO:0005524
Tsu01g03815 1513 CDD ABCC_MRP_domain2 1269 1489 - -
Tsu01g03815 1513 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 647 862 IPR027417 -
Tsu01g03815 1513 Gene3D - 1254 1504 IPR027417 -
Tsu01g03815 1513 CDD ABCC_MRP_domain1 648 847 - -
Tsu01g03815 1513 SMART AAA_5 675 856 IPR003593 -
Tsu01g03815 1513 SMART AAA_5 1297 1481 IPR003593 -
Tsu01g03815 1513 MobiDBLite consensus disorder prediction 891 919 - -
Tsu01g03815 1513 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 334 614 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu01g03815 1513 CDD ABC_6TM_ABCC_D2 954 1246 IPR044726 GO:0140359
Tsu01g03815 1513 ProSitePatterns ABC transporters family signature. 773 787 IPR017871 GO:0005524
Tsu01g03815 1513 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 648 871 IPR003439 GO:0005524
Tsu01g03815 1513 Pfam ABC transporter transmembrane region 957 1209 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu01g03815 1513 Pfam ABC transporter transmembrane region 334 601 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu01g03815 1513 MobiDBLite consensus disorder prediction 881 928 - -
Tsu01g03815 1513 Gene3D ABC transporter type 1, transmembrane domain 918 1252 IPR036640 GO:0005524|GO:0016021
Tsu01g03815 1513 Gene3D ABC transporter type 1, transmembrane domain 320 626 IPR036640 GO:0005524|GO:0016021
Tsu01g03815 1513 CDD ABC_6TM_ABCC_D1 335 622 IPR044746 GO:0140359
Tsu01g03815 1513 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1261 1504 IPR027417 -
Tsu01g03815 1513 PANTHER ABC TRANSPORTER C FAMILY MEMBER 4 83 1512 - -
Tsu01g03815 1513 Gene3D - 627 886 IPR027417 -
Tsu01g03815 1513 Pfam ABC transporter 666 799 IPR003439 GO:0005524
Tsu01g03815 1513 Pfam ABC transporter 1288 1436 IPR003439 GO:0005524
Tsu01g03815 1513 SUPERFAMILY ABC transporter transmembrane region 950 1251 IPR036640 GO:0005524|GO:0016021
Tsu01g03815 1513 SUPERFAMILY ABC transporter transmembrane region 325 627 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03815 Tsu-Chr1 45906052 45913337 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03815 1269 1511 Calmodulin-binding Proteins AT2G36910 30.400 1.74e-30 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03815 - K05666 gmx:100793361 2437.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03815 01 45906052 45913337 Tsu01g03815 01 45906052 45913337 ECH