Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03804 ATGGTCAGAAGAAATTCACAGCTTACTTTACTGgttgcatttatttttctttcatacCTCGCAAATACTAGCCAATTGGTATTTGCAAAAGAGAAAGACAATGTTAGAGAAGCTTGCAAAGTAACTAGGTATCCAAACCTTTGCATGCGCTCGCTAGCATCGTTCTCTGACAGTGCTGGAAGAAGCCCCAGCAAGTGGGCAAGGGCAGGAGTTTCGGTTACAATCGGCGAGGTTGAGCATGCTCAAACATATCTGGCAAACTTAAAGAGGCACGGACATTTAAGAGGAAGAAACAAAGTTGCGCTTTTAGATTGTGTTGAAACTTTTGCAGATGCCCTTGATGAACTTCATAGGTCATTGAATGTGCTCAGAAGACTTAGCAGAAACACATTTGGTACACAAATGGGGGACCTTAATTCATGGATAAGTGCAGCACTCACAAATGAAGATACTTGCCTCGATGGATTTCAAGGCGAAAACGGTAGGAAAATTAAATTGCTGCAAAATAAGGTTCGACAAGTCTATTATATAACCAGTAACGCTCTAGCTCTCGTCAACAAACTTGCCACTACAGGACTAGGAAGCATTTCTGATCCATAG 600 0.405 MVRRNSQLTLLVAFIFLSYLANTSQLVFAKEKDNVREACKVTRYPNLCMRSLASFSDSAGRSPSKWARAGVSVTIGEVEHAQTYLANLKRHGHLRGRNKVALLDCVETFADALDELHRSLNVLRRLSRNTFGTQMGDLNSWISAALTNEDTCLDGFQGENGRKIKLLQNKVRQVYYITSNALALVNKLATTGLGSISDP 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03804 199 CDD PMEI-like_3 38 190 - -
Tsu01g03804 199 Pfam Plant invertase/pectin methylesterase inhibitor 34 184 IPR006501 GO:0004857
Tsu01g03804 199 TIGRFAM PME_inhib: pectinesterase inhibitor domain 7 188 IPR006501 GO:0004857
Tsu01g03804 199 PANTHER PECTINESTERASE INHIBITOR-LIKE 28 183 - -
Tsu01g03804 199 SMART PMEI_2 30 184 IPR006501 GO:0004857
Tsu01g03804 199 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 190 IPR035513 -
Tsu01g03804 199 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 33 188 IPR035513 -
Tsu01g03804 199 PANTHER PLANT INVERTASE/PECTIN METHYLESTERASE INHIBITOR SUPERFAMILY PROTEIN 28 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03804 Tsu-Chr1 45779396 45780358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03804 35 193 Carbohydrate Esterase AT3G14310 36.364 5.22e-23 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03804 - - mtr:MTR_1g088540 250.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03804 01 45779396 45780358 Tsu01g03804 01 45779396 45780358 ECH