Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03800 ATGAGCGGAGCAAAGGGGAAGAAGAAGGGAACAAGCTTCGTGATCGATTGCGCGAAGCCAGTTGAAGACAAGATTATGGACATTGCTTCTCTCGAGAAGTTCCTTCAAGAGAGGATTAAGGTTGGTGGTAAAGCTGGTGCTCTTGGTGATTCCGTCACCGTTACTCGTGAGAAGAGTAAGATCACTGTTACCTCCGATAGCAATTTCTCCAAAAGGTATTTGAAGTACTTAACCAAGAAGTACTTGAAAAAGCACAATGTGAGGGATTGGCTTCGTGTTATTGCCTCCAACAAGGACCGCAATGTCTatgagttgagatatttcaaCATTGCTGAGAATGAGGGTGAAGAGGAAGACTGA 360 0.4278 MSGAKGKKKGTSFVIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKSKITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNKDRNVYELRYFNIAENEGEEED 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03800 119 PANTHER 60S RIBOSOMAL PROTEIN L22-2-LIKE 2 119 - -
Tsu01g03800 119 Pfam Ribosomal L22e protein family 9 117 IPR002671 GO:0003735|GO:0005840|GO:0006412
Tsu01g03800 119 PANTHER 60S RIBOSOMAL PROTEIN L22 2 119 IPR002671 GO:0003735|GO:0005840|GO:0006412
Tsu01g03800 119 Gene3D - 1 119 IPR038526 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03800 Tsu-Chr1 45732164 45733606 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03800 4 119 Cytoplasmic Ribosomal Protein Gene Family AT3G05560 90.517 2.15e-65 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03800 K02891 - gmx:100500073 221.09