Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03790 ATGTCCACCTTTTATAGTTGCAGTTTTGAAGGTTATCAAGATACATTGTATACACATTCTCTAAGGCAGTTTTATAGAGAATGTGATATTTATGGAACAGTTGATTTCATATTTGGAAATGCTGCAGTTGTTTTACAAAATTGCAACATTTATCCTCGCCTTCCTCTTAGTGGACAATTCAATACCATCACAGCTCAAGGTCGAACCGATCCAAATCAAAACACTGGAACTTCAATACAAAATGCAACTATCAAAGCAGCAGATGATTTGGCTCCCAAAGTTGGAACTGTTCAAACATACCTAGGGAGACCATGGAAGGAATACTCAAGGACAGTTTTTATGCAATCCTTTATGGATAGTTTCATAAACCCTGCTGGTTGGCATGAATGGGATGGTAATTTTGCATTGAGCACTTTGTACTATGCAGAATACAATAATAGAGGAGGAGGATCAAACACTGTGAATCGAGTTACGTGGCCTGGTTATCATGTCATTGGTGCCACTGATGCCGCCAATTTCACAGTGTCTAACTTCTTAAGTGGTGATGATTGGATTCCTCAAAGTGGTGTACCATACTTGAGTGGATTGACATAG 594 0.3889 MSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPLSGQFNTITAQGRTDPNQNTGTSIQNATIKAADDLAPKVGTVQTYLGRPWKEYSRTVFMQSFMDSFINPAGWHEWDGNFALSTLYYAEYNNRGGGSNTVNRVTWPGYHVIGATDAANFTVSNFLSGDDWIPQSGVPYLSGLT 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03790 197 Gene3D - 1 197 IPR012334 -
Tsu01g03790 197 PANTHER PECTINESTERASE 1 196 - -
Tsu01g03790 197 SUPERFAMILY Pectin lyase-like 2 195 IPR011050 -
Tsu01g03790 197 Pfam Pectinesterase 1 182 IPR000070 GO:0030599|GO:0042545
Tsu01g03790 197 PANTHER PECTINESTERASE 1 196 - -
Tsu01g03790 197 ProSitePatterns Pectinesterase signature 2. 30 39 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03790 Tsu-Chr1 45623583 45624176 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03790 1 196 Carbohydrate Esterase AT4G02330 76.531 2.54e-112 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03790 K01051 - gmx:100786124 379.793