Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03789 ATGGACTCGTATCTTCAAGGTAGCTCGTCTTTGTCTCAATTGACAATACGTGCTCTTGAAGATTGTCGATTTCTTGCTGACCTTAGTTTTGAATACTTATCAAACACTTATGCCACTACAAATCAATCTAATAACGTTCTTCCAACTTCTCAAGCCGAAGACTTCGAAACTTTCCTCAGTGCCGTTTTGACTAACCAACAAACATGTTTGGATGGTTTGGACACCATAGCTTCTGATCAAAGAGTGAAAAATGACTTGTCGTCGTCACTCTCAGATGACATAAAGCTTCATAGTGTCACCCTAGCCTTGTTCAAGGAGGGTTGGGTGcctgaaaataaaataagaacatcaTGGCCACAAAACGGAagacatttgaatttcaaaaatggTCGTTTACCATTGAAGATGTCAAATAAAGTACGTGCTATTTATGACTCTGCTAGACACCATGGAAAAAAACTACTTCAAACCGTCACCAATGAAGATAATGTTGTGGTGAGTGATATTGTGATTGTTAGCCAGGATGGAAGTGGAAATTTTACCACTATCAACAACGCAATAGCTGCTGCACCAAATAACACAGTTGCTAGTGATGgatacttctttatttttatcacTAAAGGTGTGTATCAAGAGTATGTATCTATACCAAAAAACAAGAAGTACTTGATGATGGTTGGAGAAGgaatcaatcaaacaattatCACTGGCAATCACAATGTTGTTGATGGATTCACTACATTCAATTCAGCCACATTTGCTGTGGTTGCTCAAGGGTTTGTGGCTGTAAACATAACGTTTCGCAATACTGCCGGACCAGGAAAACACCAAGCAGTTGCAATGAGAAGTGGAGCTGATATTTTTGAAGGGTATCAAGACACATTGTATACCCATTCTCTAAGGCAGTTTTATAGAGAATGTGATATTTATGGAACTGTTGATTTCATATTTGGAAATGCTGCAGTTGTTTTACAAAATTGTAACATTTATCCTCGCCTTCCTCTTAGTGGACAATTCAATACCATCACAGCTCAAGGTCGAACCGATCCAAATCAAAACACTGGAACTTCAATACAAAATGCAACTATCAAAGCAGCAGATGATTTGGCTCCCAAAGTTGGAACTGTTCAAACATACCTAGGGAGACCATGGAAGGAATACTCAAGGACAGTTTTTATGCAATCCTTTATGGATAGTTTCATAAACTCAGCTGGTTGGCATGAATGGGATGGTAATTTTGCATTGAGCACTTTGTACTATGCAGAATACAATAATAGAGGAGCAAGTTCAAGCACTGTGAATCGAGTTACGTGGCCTGGTTATCATGTCATTGGTGCCACTGATGCCGCCAATTTCACGGTGTCTAACTTCTTAAGTGGTGATGATTGGATTCCTCAAAGTGGTGTACCATACTTGAGTGGATTGACATAG 1431 0.3753 MDSYLQGSSSLSQLTIRALEDCRFLADLSFEYLSNTYATTNQSNNVLPTSQAEDFETFLSAVLTNQQTCLDGLDTIASDQRVKNDLSSSLSDDIKLHSVTLALFKEGWVPENKIRTSWPQNGRHLNFKNGRLPLKMSNKVRAIYDSARHHGKKLLQTVTNEDNVVVSDIVIVSQDGSGNFTTINNAIAAAPNNTVASDGYFFIFITKGVYQEYVSIPKNKKYLMMVGEGINQTIITGNHNVVDGFTTFNSATFAVVAQGFVAVNITFRNTAGPGKHQAVAMRSGADIFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPLSGQFNTITAQGRTDPNQNTGTSIQNATIKAADDLAPKVGTVQTYLGRPWKEYSRTVFMQSFMDSFINSAGWHEWDGNFALSTLYYAEYNNRGASSSTVNRVTWPGYHVIGATDAANFTVSNFLSGDDWIPQSGVPYLSGLT 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03789 476 Gene3D - 164 475 IPR012334 -
Tsu01g03789 476 ProSitePatterns Pectinesterase signature 2. 309 318 IPR033131 -
Tsu01g03789 476 Pfam Pectinesterase 170 461 IPR000070 GO:0030599|GO:0042545
Tsu01g03789 476 Pfam Plant invertase/pectin methylesterase inhibitor 12 102 IPR006501 GO:0004857
Tsu01g03789 476 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 106 IPR035513 -
Tsu01g03789 476 PANTHER PECTINESTERASE 1 474 - -
Tsu01g03789 476 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 9 105 IPR035513 -
Tsu01g03789 476 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 1 474 - -
Tsu01g03789 476 SUPERFAMILY Pectin lyase-like 166 474 IPR011050 -
Tsu01g03789 476 CDD PMEI-like_3 3 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03789 Tsu-Chr1 45614693 45617312 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03789 1 475 Carbohydrate Esterase AT1G02810 60.079 0.0 601
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03789 K01051 - gmx:100786124 736.487