Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03788 ATGGCTTTCAATAACAAAACCATTCTACTTTCGATCTTGTTCTTTGTGTCATTGTGTGTAGCAAACGGTGTTCCACCTGAAACCATTTGTGGGTCTACCGTAGACCCTACTTATTGTAAAAATGTATTTGCCAATCAAAATGGCAATATTTATGACTATGGTCGTATATCTATTCGAAAATCTTTATCCCAATCTCGGAAGTTTATGACTTCGATTGACTCATATCTTCAAGGTGGCTCGTCTTTGTCTCAATTGACAATACGTGCTCTTGAAGATTGTCGATTTCTTGCTGACCTTAGTTTTGAATACTTATCAAACACTTATGCCACTACAAATCAATCTAATAACGTTCTTCCAACTTCTCAAGCCGAAGACTTTGAAACTTTCCTCAGTGCCGTTTTGACTAACCAACAAACATGTTTGGATAGTTTGGACACTATAGCTTCTGATCAAAGAGTGAAAAATGACTTGTCGTCGTCACTCTTTGATGACATAAAGCTTCATAGTGTCACCCTAGCCTTGTTCAAGAAGGGTTGGGTGcctgaaaataaaataagaacatcaTGGCCACAAAATGGAagacatttgaatttcaaaaatggTTGTTTACCATTGAAAATGTCAAATAGTGTACGTGCTATATATGATTCTGCTAGACAACATGGAAGAAAATTACTTCAAACGAATGGTGGTGAAGATAGTGTTTTGGTGAGTGATATTGTAGTTGTTAGCCAAGATGGAAGTGGAAATTTTACCACTATCAACGACGCAATAGCCGCTGCACCGAATAACACAGTTGCTAACGATGGatactttttcattttcatcactGAAGGTGTGTATCAAGAGTATATTTCTATACCCAAAAACAAGAAATACTTGATGATGGTTGGAGAAGgaatcaatcaaacaattatCACTGGTGATCACAATGTTGTTGATGGGTTCACAACATTCAATTCACCCACATTTGCTGTGGTTGCTCAAGGGTTCGTGGCTGTAAACATAACGTTTCGCAATACTGCTGGACCAGGAAAACACCAAGCAGTTGCAATGAGAAGTGGAGCTGATATGTCCACCTTCTATAGTTGCAGTTTTGAAGGGTATCAGGACACATTGTATACACATTCTCTAAGGCAGTTTTATAGAGAATGTGATATTTATGGAACTGTTGATTTCATATTTGGAAATGCTGCAGTTGTTTTACAAAATTGTAACATTTATCCTCGCCTTCCTCTTAGCGGACAATTCAATACCATCACAGCTCAAGGTCGAACCGATCCAAATCAAAACACTGGAACTTCTATACAAAATGCAACTATTAAAGCAGCAGATGATTTGGCTCCCAAAGTTGGAACTGTTCAAACATACCTAGGGAGACCATGGAAGGAATACTCAAGGACAGTTTTTATGCAATCCTTTATGGATAGTTTCATAAACTCAGCTGGTTGGCATGAATGGGATGGTAATTTTGCATTGAGCACTTTGTACTATGCAGAATACAATAATAGAGGAGGAGGATCAAGCACTGTGAATCGAGTTACGTGGCCTGGCTATCATGTCATTGGTGCCACTGATGCCGCCAATTTTACAGTGTCTAACTTCTTGATCGGTGATGATTGGATTCCTCAAACTGGTGTCCCATACTTGAGTGgattatag 1662 0.3706 MAFNNKTILLSILFFVSLCVANGVPPETICGSTVDPTYCKNVFANQNGNIYDYGRISIRKSLSQSRKFMTSIDSYLQGGSSLSQLTIRALEDCRFLADLSFEYLSNTYATTNQSNNVLPTSQAEDFETFLSAVLTNQQTCLDSLDTIASDQRVKNDLSSSLFDDIKLHSVTLALFKKGWVPENKIRTSWPQNGRHLNFKNGCLPLKMSNSVRAIYDSARQHGRKLLQTNGGEDSVLVSDIVVVSQDGSGNFTTINDAIAAAPNNTVANDGYFFIFITEGVYQEYISIPKNKKYLMMVGEGINQTIITGDHNVVDGFTTFNSPTFAVVAQGFVAVNITFRNTAGPGKHQAVAMRSGADMSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPLSGQFNTITAQGRTDPNQNTGTSIQNATIKAADDLAPKVGTVQTYLGRPWKEYSRTVFMQSFMDSFINSAGWHEWDGNFALSTLYYAEYNNRGGGSSTVNRVTWPGYHVIGATDAANFTVSNFLIGDDWIPQTGVPYLSGL 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03788 553 SMART PMEI_2 21 174 IPR006501 GO:0004857
Tsu01g03788 553 ProSitePatterns Pectinesterase signature 2. 387 396 IPR033131 -
Tsu01g03788 553 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 177 IPR035513 -
Tsu01g03788 553 PANTHER PECTINESTERASE 9 552 - -
Tsu01g03788 553 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 9 552 - -
Tsu01g03788 553 Pfam Plant invertase/pectin methylesterase inhibitor 27 156 IPR006501 GO:0004857
Tsu01g03788 553 Pfam Pectinesterase 241 539 IPR000070 GO:0030599|GO:0042545
Tsu01g03788 553 Gene3D - 235 553 IPR012334 -
Tsu01g03788 553 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 177 IPR035513 -
Tsu01g03788 553 SUPERFAMILY Pectin lyase-like 237 552 IPR011050 -
Tsu01g03788 553 CDD PMEI-like_3 28 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03788 Tsu-Chr1 45605588 45607395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03788 8 553 Carbohydrate Esterase AT1G02810 59.860 0.0 681
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03788 K01051 - gmx:100786124 865.529