Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03777 ATGTGTGGCGGTGCTATCATCGCTGACTTCATTCCTCGCCGCGGCGGTCGCCGTCTTACCGCCGCTGAACTCTGGCCTAACTCATTCGGTCAACAAATTGACTCCTCTTCCTCGGACTTTGATTTTTCTCATACTGTTgatcaacaacaaccaccacccATTACTCTCAAAAGATCACTACCTCCCAAAGTTAACGAGCGACTTGAAAAGCCTGTGAAAAAACAGAGGAAGAATCTCTACAGAGGGATACGACAACGTCCATGGGGAAAATGGGCTGCAGAAATTCGTGATCCTAGAAAAGGTGTTCGTGTTTGGCTTGGTACATTCAACACTGCTGAAGAAGCTGCTAGAGCTTATGACAAAGAAGCTCGAAAAATCCGCGGCAAAAAAGCTAAGGTTAATTTCCctaatgaagatgatgaatattCCATTCAAGATAATCGTCGTCACGATAATCGTCCACCACAATCGATTCGACCACCGAATCATGCTCTCTATCGACAACAATACCCGAAAAATCTGAACTTGGAATTTGGTTATGATCTGAACCAAGCTGACACAATTCAAAATTCTCATGTGGGTTCAATGAACAATGAACCTTTTATTATATCTGGTTCTAATGGTGATGAGAATTCTGTATATGGGTCTGGTTCATGTTCAGAAGCTGGTTATTCTGTGATAGAGTTCAATGAGGGTTCGAATCCGAACGAAACCGGTTATTTTGGTGGTGTTGTGAATGAacatgagaaagaaaaagagaaagttCAAGAATCACAACATGCTGTTGAAGCTGATGAAGCAGCTAAGAATGAAGTTCAAGAattgtctgatgaattaatggCTTATGAAGATTACATGAAGTTTTATCAGATTCCATACTATGATGGACAATCTATGCCACCAAATATTGTTCAGGAACATGTTGTTGGTGATTTATGGAgctttgattga 951 0.3754 MCGGAIIADFIPRRGGRRLTAAELWPNSFGQQIDSSSSDFDFSHTVDQQQPPPITLKRSLPPKVNERLEKPVKKQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDKEARKIRGKKAKVNFPNEDDEYSIQDNRRHDNRPPQSIRPPNHALYRQQYPKNLNLEFGYDLNQADTIQNSHVGSMNNEPFIISGSNGDENSVYGSGSCSEAGYSVIEFNEGSNPNETGYFGGVVNEHEKEKEKVQESQHAVEADEAAKNEVQELSDELMAYEDYMKFYQIPYYDGQSMPPNIVQEHVVGDLWSFD 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03777 316 CDD AP2 80 137 IPR001471 GO:0003700|GO:0006355
Tsu01g03777 316 SUPERFAMILY DNA-binding domain 79 137 IPR016177 GO:0003677
Tsu01g03777 316 PRINTS Ethylene responsive element binding protein signature 80 91 IPR001471 GO:0003700|GO:0006355
Tsu01g03777 316 PRINTS Ethylene responsive element binding protein signature 102 118 IPR001471 GO:0003700|GO:0006355
Tsu01g03777 316 Gene3D AP2/ERF domain 79 137 IPR036955 GO:0003700|GO:0006355
Tsu01g03777 316 PANTHER DNA-BINDING DOMAIN 1 294 IPR044808 GO:0003700|GO:0009873
Tsu01g03777 316 ProSiteProfiles AP2/ERF domain profile. 79 136 IPR001471 GO:0003700|GO:0006355
Tsu01g03777 316 SMART rav1_2 79 142 IPR001471 GO:0003700|GO:0006355
Tsu01g03777 316 Pfam AP2 domain 80 128 IPR001471 GO:0003700|GO:0006355
Tsu01g03777 316 MobiDBLite consensus disorder prediction 130 163 - -
Tsu01g03777 316 PANTHER EREBP TRANSCRIPTION FACTOR 1 294 - -
Tsu01g03777 316 MobiDBLite consensus disorder prediction 36 58 - -
Tsu01g03777 316 MobiDBLite consensus disorder prediction 130 156 - -
Tsu01g03777 316 MobiDBLite consensus disorder prediction 36 54 - -
Tsu01g03777 316 Coils Coil 245 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03777 Tsu-Chr1 45517102 45518584 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03777 1 137 AP2-EREBP Transcription Factor Family AT3G16770 54.225 4.19e-43 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu01g03777 AP2 1.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03777 K09286 - gmx:100780763 377.481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03777 01 45517102 45518584 Tsu01g03777 01 45517102 45518584 ECH