Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03776 ATGGTGTCACTCAAACTTCAGAAGCGGCTCGCCGCTAGTGTTCTCAAGTGTGGAAGAGGAAAGGTCTGGCTTGACCCTAATGAGGGCAATGAAATCTCCATGGCTAATTCACGCCAAAACATCCGGAAGTTGGTTAAGGATGGTTTCATTATCAGGAAGCCAACTAAGATTCACTCCCGCTCTCGTGCTAGGCGTATGAAGGAGGCCAAGAAGAAGGGACGTCATTCTGGATATGGTAAGAGAAAGGGTACACGAGAGGCTAGACTCCCCACCAAAATCCTTTGGATGAGGAGGATGCGTGTCCTCAGGCGTTTGCTTCGCAAGTACCGAGAGGCAAAAAAGATCGATAAGCATATGTATCATGATATGTACATGAAGGTGAAGGGTAATGTCTTCAAGAACAAGAGAGTTCTTATGGAAAGTATTCATAAGTCCAAGGCTGAGAAGGCAAGAGAGAAGACACTATCTGACCAGTTTGAGGCCAAGAGGGCAAAGAACAAGGCCAGCCGCGAAAGAAAATTTGCTCGCAGAGAAGAGCGCTTTGCCCAAGGTCCTGGAGAGAAGGCACCTGCAGCACCAGTTGCACCAGCTGCAACAGCAACTCAGCCTGCCCAATCAAAGAAATCCAAGAAGTAA 636 0.4796 MVSLKLQKRLAASVLKCGRGKVWLDPNEGNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKKKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKFARREERFAQGPGEKAPAAPVAPAATATQPAQSKKSKK 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03776 211 PANTHER RIBOSOMAL PROTEIN L19 1 211 - -
Tsu01g03776 211 MobiDBLite consensus disorder prediction 58 85 - -
Tsu01g03776 211 ProSitePatterns Ribosomal protein L19e signature. 7 26 IPR023638 -
Tsu01g03776 211 SMART Ribosomal_L19e_2 3 146 IPR000196 GO:0003735|GO:0005840|GO:0006412
Tsu01g03776 211 CDD Ribosomal_L19e_E 4 167 IPR033935 GO:0003735|GO:0022625
Tsu01g03776 211 Pfam Ribosomal protein L19e 4 145 IPR000196 GO:0003735|GO:0005840|GO:0006412
Tsu01g03776 211 MobiDBLite consensus disorder prediction 58 79 - -
Tsu01g03776 211 Gene3D - 57 188 - -
Tsu01g03776 211 Hamap 50S ribosomal protein L19e [rpl19e]. 3 149 IPR000196 GO:0003735|GO:0005840|GO:0006412
Tsu01g03776 211 SUPERFAMILY Ribosomal protein L19 (L19e) 3 144 IPR035970 GO:0003735|GO:0005840|GO:0006412
Tsu01g03776 211 MobiDBLite consensus disorder prediction 144 211 - -
Tsu01g03776 211 PANTHER 60S RIBOSOMAL PROTEIN L19 1 211 IPR039547 GO:0003723|GO:0003735|GO:0022625
Tsu01g03776 211 MobiDBLite consensus disorder prediction 144 184 - -
Tsu01g03776 211 Gene3D - 2 56 IPR015972 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03776 Tsu-Chr1 45502957 45505710 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03776 1 211 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 82.938 5.77e-126 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03776 K02885 - gmx:100527501 363.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03776 01 45502957 45505710 Tsu01g03776 01 45502957 45505710 ECH