Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03771 ATGAAAGAAACCAAATTAGGCATAAACCAAAGTTTCAAGAATCACAGCTTGAAACATAGAAGTTCTTTAATTTCCAAGATGAAAACCAAAGTTCACTTGATTGACTTCACTCCTGATGAACATGATGCAGCTGATGGTCTTGTTTTATTGCAAACGCTATTCCAAAAGAAGGAgattattagaaaattgaaaataacttTTGGTGGCAAGAGGATTTGTGAAAAAACCTATCACAACAATGTTCCTTCTGTCGTTTCAAAAAACAATGTTCATTCAACACCACAAATCATTATTCCTAGTGTTGTTATGGGAAATGAATACAACCGTGCTCCAAATATACCAATGATTCCCGGCATGCCGAACAATAATATTCTTGGATGTTGCAAGccttttgtgaagaaattatCGGTGAGTGATTTGAAGGTGGATTTAAATAGATTGTTTTTAGACAAGAGCCATGTGAAAAAATATTTCTTGCCATTGTTGAAAGAAGGCGAAGATGTTGAAGAAGGAATAGACGTCATTGTATATGACATGCAAGGCAAAATGTTCAACATGAAGTTCAAGTTCTGGTGCCAAAAATTTTATGTTCTCAATGGAGGGTGGAAGACTTTTTTCCAATCGCATTCTTTGTTAGCAAATCAAGATTATGTTACGGTCTGGATGTTCCGTCATTCAGAAACAGATAATTTAAGTTTTGCTCTTAGTGTGAGAAGAGTATAG 723 0.3361 MKETKLGINQSFKNHSLKHRSSLISKMKTKVHLIDFTPDEHDAADGLVLLQTLFQKKEIIRKLKITFGGKRICEKTYHNNVPSVVSKNNVHSTPQIIIPSVVMGNEYNRAPNIPMIPGMPNNNILGCCKPFVKKLSVSDLKVDLNRLFLDKSHVKKYFLPLLKEGEDVEEGIDVIVYDMQGKMFNMKFKFWCQKFYVLNGGWKTFFQSHSLLANQDYVTVWMFRHSETDNLSFALSVRRV 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03771 240 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 80 239 IPR005508 GO:0003677
Tsu01g03771 240 SMART B3_2 131 239 IPR003340 GO:0003677
Tsu01g03771 240 Pfam B3 DNA binding domain 132 219 IPR003340 GO:0003677
Tsu01g03771 240 Gene3D - 129 240 IPR015300 -
Tsu01g03771 240 CDD B3_DNA 131 239 IPR003340 GO:0003677
Tsu01g03771 240 PANTHER B3 DOMAIN PLANT PROTEIN 80 239 - -
Tsu01g03771 240 ProSiteProfiles B3 DNA-binding domain profile. 132 240 IPR003340 GO:0003677
Tsu01g03771 240 SUPERFAMILY DNA-binding pseudobarrel domain 131 233 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03771 Tsu-Chr1 45431982 45432704 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03771 129 235 B3 DNA Binding Superfamily AT4G03170 44.444 1.22e-21 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tsu01g03771 B3 1.7e-07 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03771 - - mtr:MTR_3g013810 193.741