Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03752 ATGGGAAGAGCTCCTTGTTGTGAGAAAGTTGGATTGAAAAGGGGAAGATGGacaaatgaagaagatgagatcTTGACAAAATATATTCAGGACAATGGAGAAGGATCTTGGAGGTCATTGCCCAAAAATGCAGGATTATTAAGGTGCGGGAAGAGTTGTAGATTAAGATGGATTAATTATTTGAGAACAGACCTCAAAAGAGGGAACATTTCtaaggaagaagaagatacaATTGTAAAGTTGCACACTTCTTATGGCAACAGGTGGTCCATGATAGCTAGCCACTTGCCGGGAAGAACCGACAACGAAATTAAAAACCATTGGAATTCTCATCTCAGTAGAAAAATTTACAGTTTCTCCAAAATATCCAACACTACAGAGCCAAAGATCATTGATGTTCCTCCTCCTAAACGCAAATGTGGCAGAACAAGTCGTTGGGctatgaagaaaaacaaaaactacaaaaagcAAACCGTCACTAATACTAAAGAAACCGTCACTAATACTGAAGCAACTGTCACTAATACTAAAGAAACTGTCACTATTGAACCTGAAGTTCAAATTCCACGCACCCCATCACTAGAAAATGAGGTTGATGTGGTAAAAACAACAcatgaagaagagaaagaagaaacttATGATTATGAATCATGTGAAGACATCATGGTACTGAGTGAATTATTAGATAGCATTAATGAAGAAAATGGGGGGTTGTGTATGGAAAATTGTTTGGTGGAAACATGTGGTACTGTTACAAATTTaagtgaagagagagaaacgGTGGGTGTTATGGTTATAGgtgaagaaaatgaaagaacaacgaatgatgatggtgatgtgtatcttaataataatcataaattgGATTCATGTGAGAGTAGTGTGAATAATTACCAAAGCAGCTCAAATAATGGGGAAAGTGATGAATGGTCCTCAATGGATTTAAATTTTGATCATGATGATGATAAATGGAATTGGGAAAGTGTGATGGAGTTTAatattgttgatgatgataatgatgatagtTATAGAGAACATAAagaaaagattttgaaattactgtatgatgatgatgattttgaaggTGATAGTAAGATATTGGGAGAAATTGATCCTCAGAAACAAAATGATTTGATTGCTTGGTTTCTCTCTTGA 1155 0.29 MGRAPCCEKVGLKRGRWTNEEDEILTKYIQDNGEGSWRSLPKNAGLLRCGKSCRLRWINYLRTDLKRGNISKEEEDTIVKLHTSYGNRWSMIASHLPGRTDNEIKNHWNSHLSRKIYSFSKISNTTEPKIIDVPPPKRKCGRTSRWAMKKNKNYKKQTVTNTKETVTNTEATVTNTKETVTIEPEVQIPRTPSLENEVDVVKTTHEEEKEETYDYESCEDIMVLSELLDSINEENGGLCMENCLVETCGTVTNLSEERETVGVMVIGEENERTTNDDGDVYLNNNHKLDSCESSVNNYQSSSNNGESDEWSSMDLNFDHDDDKWNWESVMEFNIVDDDNDDSYREHKEKILKLLYDDDDFEGDSKILGEIDPQKQNDLIAWFLS 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03752 384 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tsu01g03752 384 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 341 - -
Tsu01g03752 384 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Tsu01g03752 384 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tsu01g03752 384 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tsu01g03752 384 CDD SANT 16 61 IPR001005 -
Tsu01g03752 384 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tsu01g03752 384 SMART sant 66 114 IPR001005 -
Tsu01g03752 384 SMART sant 13 63 IPR001005 -
Tsu01g03752 384 Gene3D - 11 67 - -
Tsu01g03752 384 CDD SANT 71 112 IPR001005 -
Tsu01g03752 384 Gene3D - 71 116 - -
Tsu01g03752 384 PANTHER MYB TRANSCRIPTION FACTOR 2 341 - -
Tsu01g03752 384 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tsu01g03752 384 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03752 Tsu-Chr1 45277659 45284876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03752 1 163 MYB Transcription Factor Family AT5G49330 65.000 1.04e-76 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu01g03752 Myb_DNA-binding 3.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03752 K09422 - gmx:100814275 317.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03752 01 45277659 45284876 Tsu01g03752 01 45277659 45284876 ECH
Tsu07g04271 07 48168029 48172478 Tsu01g03752 01 45277659 45284876 PCT