Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03749 ATGCTTGAAACTACTCACTCATCGCGAATCTTTCGCGGTGTTCATTTCGCTCTCTTTGGTTTCGATCCTCACACAGAATCTCAGATTCGATTCAAGCTTGTTAATGGCGGTGGAATTGATGTGGGGAAAAACAATGGGAGTTGTACGCATGTCATTGTTGATAATATTGCTTATGATAATCCTGTGTGTATTGCTGCTAGAAATGATGGAAAGACGTTGGTTACTGCATTGTGGGTTGAACATAGTGCTGATATTGGAATGCCTGTTGATGCTAACTCgGTTATGTATAGACCGCTGAAAGATTTGGATGGCATTCCAGGTGCAAAAGATTTGATTGTCTGCTTGACTGGCTATCTACGCCAGGATCGGGAAGACATTATGACAATGGTTGGCCTGATGGGTGCCCAGTTTTCTAAACCGTTGGTGGCAAACAAGGTTACTCATCTTATATGCTACAAATTTGAAGggGAGAAGTACGAGCTTGCCAAGAAATTGGCCACAATAAAGCTAGTTAATCATCGTTGGCTGGAAGATTGCTTGAAGAATTGGGTGCTTCTTCCTGAAGACAAATATAACAAGAGTGGTTTTGAACTGGAGATGATGGCGGAAGAGGCTAAGGATTCTGAGGATGAGGCTGAAGATTCTAAGCTGGGGAAATCAGGGGGAAGAAATAGAAGCAGAAGTCCCCTTGGTTCAAAATTTGGTACAGCTGTGACTCACGAATTGTCAAAATCTTTAAGAGAGGAGGCATCAAATGCCATCCCAGATTCTACTGGTCCTCAGGTTTTGCCAAACGCCGATAAGGGTAAATACTCTTCAACTACTACAGGAAATAAGAACAATTCTGATCAAGACTTAGACTTGCATAATATTGGTAATCTGAAGGATCTTGGCATTACTGGAAATACAAATGCATCTGGTGATGACACTTCGGAGATCAAGAAGTTAGGTTACACAAGATCAACTTCTGTAAGTGCTGATGTACTTGCACATTCAGATGAAAAGCTTGGTGCTACAAGTTATTCTAGGAAGAACCAAAAAGGGTTTAACTTTTCAAGGGGATTAGACGAATGTGAAGGCAACAACCTTGAAACCCCTTCCACCAAGGTAGAAAAGGCAAGTGATGGAATCAAATCTGCACGTGTTGAAGGTTCTGGGAAAGAAACTGGTGTTATTCAAGAGGATTATGGAAATAATTTATTGCCTCAAAAGAGAACGAATGAAGCTGCTTcaaccaaatcaaaatcaagaaagATCACTGCTAATTCAAAGTTGTCTATTGAAAGAACGCCACCGGCAAATGGTAAATCTCAAGGATTAAAAGTGTCATCTGTGGTTGATGAGCCACCTGTGTCTGATGGCTTTCTTTCTgctgacaaagatggtaaaaatAACTTAGATACTTGCTTGATTTCTAAATCTGCAGCTTCTACCACCAACTCAGTGGCATTTGATAAGCCTATCTCAAGAAATGCAGAGTCTGCTCAATGTAATGATGCTTGTCAGAAGTCAGCTAAAAAGGCTGTTCAAAGCTTAAGTAAGTCTAAAATTAGTGGCGAGACTGATATAACAGGTTTTGGAATGGGACAAAGTGATAACGAAGCAGAGAAATTTAATGTCACTACAAATCTCGAGTGTCCATCACCAGGAAAGAAGTCAAAAGATGAAGGATTTGTTGGTCTTGATAATTGGGATTTAATCAATGAAGAAAGCAATAAGCAGATTAAAAAGTCACCCCGCAAGAAGTCAGCTTCCAAGAGAACTTTGGGTTCTAGACCCAGAAAAGGTGTTACTGCTAAATTGAAAAGTCCAGTGTGCGTGAATAAAACTATGCAGCAAGATGAAGGCGTAAGTTCATCCAGTAGAAGCAAAGAAATAGCAACCTCATGCACTAAGAAGCATCAGGCATCACCCGAAATCCTTGATGTCAATAAATTGATGGAGCAAGAAAAGGTTTGTGAGTATGCTGAAGATGTTGGTGGCAAAACTGATTTTTTGGATGATGAAACAGAGGCTCCAGATGACAAGTGTGAATATGAGTTGGGAGTGGCTCCTGATGAAGACTTGGTTCATCTTTCAAAGAAATTAGACACCTCAATAGAAGAGAAGTTAGATGCAGTTGACCATGATAAAAAATGTGAAGCAATGCCTCCTAAAAAGGTCAGTAATAAAACTGAAAAACAGAAGCTACCTTCACTGTTAGACTCAACctcaaagttaaaagtaaagcATCAAGCTACAAAACGTCCTGCAAGTAAAACCAAGAAGACCACAGTTGCAAAGAAATTAGCGAAATCTGAAGAGGCAGTATCTGGGGAGAAGATTCCTAATGAGACAAAGGATGAGGCAGGAATAAAAATCCTGAAAGAAATGTCTGTACATTCTGATATAAGTGAGAACTCAAATGTACCAAGAAATAAGCCAGATAATTTTGTTGAAGAGGAGAAGGAGAATAGACCAAATGATAGAGAACATGATTTAGTCAAGAGTACGAGTGTTGGAAATCAAACTACTAAATCTAGTGTTAAGCCAGCAAATATCAAGTCTAAGAAAATGAAGCACAATTCATCTATATCCGAATTTAAAGCAAGAGTAAAAACTGAAGCCACATGTTTTATATTAAGTGGACATCGCTTCCAGAGAAAGGAGTATCAACAAGTAATCAAGCGTTTGAAAGGAAGGGTTTGCCGTGATTCTCATCAGTGGTCATATCAGGCAACACACTTCATAGCCCCAGACCCTATAAGGAGGACAGAGAAATTTTTTGCTGCTAGTGCATCAGGAAGGTGGATTCTTAAAACTGATTTCTTAACTGCGAGTAGCCAGGCAGGAAAATTATTGCCCGAGGAGCCTTATGAGTGGCACAAAAATGGTCTCAGTGAGGATGGTGCCATCAATATGGAGGCTCCAAGAAAGTGGCGGCtgttgaaagaaagaacaggTCATGGTGCCTTCTATGGGTTGCGTGTTGTCGTATATGGCGATTGTTTCGCTCCACCTTTGGATACTCTGAAGCGCGTGGTCAAAGCTGGAGATGGAACAATATTAGCAACGTCCCCTCCTTATACCCGCTTCCTTGATAGTGGAGTTGACTATGCCTTAGTTAGCCCTGGCATGCCACGCGTTGATATGTGGGTCCAAGAGTTCTTAAAACACGAGATACCGTGTGTTGTAGCGGACTACTTGGTGGAGTATGTATGCAAGCCCGGGTTCTCCCTTGAGAGACATGTGTTATATGGCACTCATGCTTGGGCAGATAGGTCATTTGCAAAACTTCAGAGTAAGGCAGAAGAGATTATCGAGGAGGTCATTCCTCCTAAGGATtgcaatgatgatgatgatgatgtagCTTGCGAAGTATGTGGATCCCGGGAAAGAGGAGATGTCATGCTGATTTGTGGTAATGAAAGTGGATCGGTTGGCTGTGGAGTGGGTGCACATATCGATTGCTGCAATCCTCCGCTCACAGTTGTTCCTGAGGAAGATTGGTTTTGCCCAAAATGTAGTAGCTCCCAAAAATGCTCACAAAATCCCAGTAAAAGGAAAAAGGGTGCATTGTCTTCATTAAAGAAGAAGTAG 3579 0.4007 MLETTHSSRIFRGVHFALFGFDPHTESQIRFKLVNGGGIDVGKNNGSCTHVIVDNIAYDNPVCIAARNDGKTLVTALWVEHSADIGMPVDANSVMYRPLKDLDGIPGAKDLIVCLTGYLRQDREDIMTMVGLMGAQFSKPLVANKVTHLICYKFEGEKYELAKKLATIKLVNHRWLEDCLKNWVLLPEDKYNKSGFELEMMAEEAKDSEDEAEDSKLGKSGGRNRSRSPLGSKFGTAVTHELSKSLREEASNAIPDSTGPQVLPNADKGKYSSTTTGNKNNSDQDLDLHNIGNLKDLGITGNTNASGDDTSEIKKLGYTRSTSVSADVLAHSDEKLGATSYSRKNQKGFNFSRGLDECEGNNLETPSTKVEKASDGIKSARVEGSGKETGVIQEDYGNNLLPQKRTNEAASTKSKSRKITANSKLSIERTPPANGKSQGLKVSSVVDEPPVSDGFLSADKDGKNNLDTCLISKSAASTTNSVAFDKPISRNAESAQCNDACQKSAKKAVQSLSKSKISGETDITGFGMGQSDNEAEKFNVTTNLECPSPGKKSKDEGFVGLDNWDLINEESNKQIKKSPRKKSASKRTLGSRPRKGVTAKLKSPVCVNKTMQQDEGVSSSSRSKEIATSCTKKHQASPEILDVNKLMEQEKVCEYAEDVGGKTDFLDDETEAPDDKCEYELGVAPDEDLVHLSKKLDTSIEEKLDAVDHDKKCEAMPPKKVSNKTEKQKLPSLLDSTSKLKVKHQATKRPASKTKKTTVAKKLAKSEEAVSGEKIPNETKDEAGIKILKEMSVHSDISENSNVPRNKPDNFVEEEKENRPNDREHDLVKSTSVGNQTTKSSVKPANIKSKKMKHNSSISEFKARVKTEATCFILSGHRFQRKEYQQVIKRLKGRVCRDSHQWSYQATHFIAPDPIRRTEKFFAASASGRWILKTDFLTASSQAGKLLPEEPYEWHKNGLSEDGAINMEAPRKWRLLKERTGHGAFYGLRVVVYGDCFAPPLDTLKRVVKAGDGTILATSPPYTRFLDSGVDYALVSPGMPRVDMWVQEFLKHEIPCVVADYLVEYVCKPGFSLERHVLYGTHAWADRSFAKLQSKAEEIIEEVIPPKDCNDDDDDVACEVCGSRERGDVMLICGNESGSVGCGVGAHIDCCNPPLTVVPEEDWFCPKCSSSQKCSQNPSKRKKGALSSLKKK 1192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03749 1192 MobiDBLite consensus disorder prediction 808 829 - -
Tsu01g03749 1192 MobiDBLite consensus disorder prediction 1169 1192 - -
Tsu01g03749 1192 MobiDBLite consensus disorder prediction 830 845 - -
Tsu01g03749 1192 SMART PHD_3 1117 1169 IPR001965 -
Tsu01g03749 1192 SMART BRCT_7 982 1069 IPR001357 -
Tsu01g03749 1192 SMART BRCT_7 8 86 IPR001357 -
Tsu01g03749 1192 SMART BRCT_7 106 183 IPR001357 -
Tsu01g03749 1192 SMART BRCT_7 863 944 IPR001357 -
Tsu01g03749 1192 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 1 1168 - -
Tsu01g03749 1192 Gene3D BRCT domain 981 1080 IPR036420 -
Tsu01g03749 1192 SUPERFAMILY BRCT domain 871 958 IPR036420 -
Tsu01g03749 1192 SUPERFAMILY BRCT domain 8 92 IPR036420 -
Tsu01g03749 1192 MobiDBLite consensus disorder prediction 1169 1183 - -
Tsu01g03749 1192 MobiDBLite consensus disorder prediction 715 783 - -
Tsu01g03749 1192 Pfam PHD-finger 1118 1170 IPR019787 -
Tsu01g03749 1192 Pfam BRCA1 C Terminus (BRCT) domain 874 939 IPR001357 -
Tsu01g03749 1192 Pfam twin BRCT domain 111 175 IPR001357 -
Tsu01g03749 1192 SUPERFAMILY BRCT domain 109 192 IPR036420 -
Tsu01g03749 1192 MobiDBLite consensus disorder prediction 795 854 - -
Tsu01g03749 1192 CDD BRCT_TopBP1_rpt7 871 944 - -
Tsu01g03749 1192 ProSiteProfiles BRCT domain profile. 869 954 IPR001357 -
Tsu01g03749 1192 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1081 1184 IPR013083 -
Tsu01g03749 1192 MobiDBLite consensus disorder prediction 605 634 - -
Tsu01g03749 1192 MobiDBLite consensus disorder prediction 399 441 - -
Tsu01g03749 1192 MobiDBLite consensus disorder prediction 399 446 - -
Tsu01g03749 1192 MobiDBLite consensus disorder prediction 743 759 - -
Tsu01g03749 1192 ProSiteProfiles BRCT domain profile. 109 193 IPR001357 -
Tsu01g03749 1192 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 1 1168 IPR044254 -
Tsu01g03749 1192 SUPERFAMILY FYVE/PHD zinc finger 1100 1169 IPR011011 -
Tsu01g03749 1192 Gene3D BRCT domain 1 95 IPR036420 -
Tsu01g03749 1192 MobiDBLite consensus disorder prediction 569 634 - -
Tsu01g03749 1192 ProSiteProfiles Zinc finger PHD-type profile. 1115 1171 IPR019787 -
Tsu01g03749 1192 Gene3D BRCT domain 99 221 IPR036420 -
Tsu01g03749 1192 MobiDBLite consensus disorder prediction 760 783 - -
Tsu01g03749 1192 MobiDBLite consensus disorder prediction 267 287 - -
Tsu01g03749 1192 Gene3D BRCT domain 864 980 IPR036420 -
Tsu01g03749 1192 MobiDBLite consensus disorder prediction 203 287 - -
Tsu01g03749 1192 MobiDBLite consensus disorder prediction 360 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03749 Tsu-Chr1 45242030 45249194 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03749 129 447 Core DNA Replication Machinery Family AT4G02110 36.202 9.39e-40 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tsu01g03749 BRCT 4e-08 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03749 K10728 - gmx:100799144 1282.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03749 01 45242030 45249194 Tsu01g03749 01 45242030 45249194 ECH