Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03743 aTGGGTGAAGTTGTTTTGTTGGTTGATGATTTGAAATTAATTTCTGGATTTTCTAGATGTAGAATATGTCATGAAGAAGAATTTGAGAGCTTCAAAAGCTTAGAAGCTCCTTGTGCTTGTTCTGGCACTGTTAAGTTTGCTCATAGAGATTGTATTCAAACATGGTGTAATGAGAAAGGAAACACAACTTGTGAAATTTGTTTACAGCAATATGAACCTGGATATACAGCACCGCCACCAAAGAAACCTCAAAAATCTGAAGAAGCAATGACCATTGGCATTAGCcttgaaattgaaataacaaCAAGGAGGGAAGAAAGAGGTTTAAACAGAAGAATAAGTGGTTATGTAATAACAAGACAAGAAAACAATTACTCTGAATTTGAATGCAACTATGCTGCTGATAGAAGCGTGTCTTGTTGTCGATCACTGGCTTTAGCTtTTACTCTCATATTACTTCTAAGACATCTTTTTGCTTTGCTTACAAATGGAATGGAAGATTATCCATTTACAATTCTTACAatctTTATGCTAAGGGCCAGTGGAATTATTATACCTATGTGCATAATTATTAGGACTATGGGTGCCATTCATGAAAGTATTCAGCGTCACTATCAACAGGATTCTGAGGATGAGTCATCAAtgtctgatgaagatgatgaagaaaatgaaacatCACATATTGCAATTCTAAGACATTCACATTATTAG 711 0.3263 MGEVVLLVDDLKLISGFSRCRICHEEEFESFKSLEAPCACSGTVKFAHRDCIQTWCNEKGNTTCEICLQQYEPGYTAPPPKKPQKSEEAMTIGISLEIEITTRREERGLNRRISGYVITRQENNYSEFECNYAADRSVSCCRSLALAFTLILLLRHLFALLTNGMEDYPFTILTIFMLRASGIIIPMCIIIRTMGAIHESIQRHYQQDSEDESSMSDEDDEENETSHIAILRHSHY 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03743 236 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
Tsu01g03743 236 SMART ringv_2 19 68 IPR011016 GO:0008270
Tsu01g03743 236 MobiDBLite consensus disorder prediction 202 226 - -
Tsu01g03743 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 77 IPR013083 -
Tsu01g03743 236 CDD RING_CH-C4HC3_MARCH 20 67 - -
Tsu01g03743 236 Pfam Protein of unknown function (DUF3675) 73 194 IPR022143 -
Tsu01g03743 236 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
Tsu01g03743 236 SUPERFAMILY RING/U-box 19 72 - -
Tsu01g03743 236 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 1 233 - -
Tsu01g03743 236 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 233 IPR033275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03743 Tsu-Chr1 45161922 45164802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03743 20 67 C3H Transcription Factor Family AT2G37950 44.898 3.60e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03743 - - gmx:100797029 297.745
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03743 01 45161922 45164802 Tsu01g03743 01 45161922 45164802 ECH
Tsu07g04280 07 48265544 48267752 Tsu01g03743 01 45161922 45164802 PCT