Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03742 ATGGCATTGCTTCGACCTTCATCTTTCCTAATCTTGTTGGCATATGGTGCACTAATAGTCATAGCCTCATTGACACCATGTTGGTATATCTTGGTCACACATATTGAGAAACATGTGAATTTGCACTCAGCAAATATTGTGTCCCAATTGCACTCACAAATTGAGTACTCTGGACAAATCTTACAACcaataaaatcatcatcaacaaatttATCAAGATTATTGAGTTCAACCCTTAATTCTACTAATGTCACTTTCTCTGATGTTAACACCAAGGTCGCTCCGGCATTATTTCAAGCATTGAAGACAATTCCCCACTTAACACAAATTTCATACATGGGAGTGGATGGTCTTTTTTTCACACATTACAAGGATGGTGATCAAGTTCTAGCAATGTACTCTAACTCATCTAGGGTTGCATCAAATAAAACCATATACTATATTCAACCCGTAAATCGCGACACCGGAGAGATTATTGGTGAAGCCATAATATCTAATAAAACTATCAATATTGATGCAAGTTGGATAAATGGAgcaaataatatttcaaatgaaTTTGTATCATTGGGAACAAAGTTGAGCAATGTTAGTGATCTTTTGTTCATGAATTCAGCTAGAATCAATAGAATAGGAGGGATTTCTCTTGGATTTTCGGTGAAAATATTAACCGATTATGTGACTCGCACTGTCGATCGTCAAGGGACAAAATCGTATTTGGCTACCAAAGACGGGAAAGTCATTGCAAAAGGAATTCAAAATACTCGATTGATGATTTTTAATGATAGTGTTTCTTTACAATCTTTGAATGGTAATGGTGGTCTAATAAAGAATGAGGGAATTGTATCTTGCAAGGATCAAGTTGATGGTTCAAATTTGAATATTCAAGATACTCAATATTTGATTCATTGCTACCCCATTGATATTATGGGAATAGAATCGGTATATGTATTAGCTATCCCACAAAATGGAATTCTCAGCATTAATCCAAGTTATTACAAACAAAAGGGATTAATACTCATGATTGTGATGATGGTTGTAATATTCATGTCTCTCTTGAGTTTTCTATTCATGAATGTTGGAgtgaaaagaagagaaatgcAATTATGTGCTTCACTCATAAAACAAATGGAAGCAACAGAACAAGCTGAAAGAAAACATATGAACAAGAGTCTTGCTTTTGCTAGTGCTAGCCATGATGTTCGAGCTTATCTTGCTGGTCTTGTTGGTTTGATTGAAATGTCCTCTAAATTAGTTGTTTCTAATTCTGAATTGGATAAACCTCATTCTGAATTAGAGACTAATTTAAAACAAATGGATAATTGTGCACAAGATTTGCTAGGACTGTTAAATTCTATACTTGACACAAGCAAAATTGAGGCAGGAAAAATGCAACTAGAGGAAGAGGAATTTGATTTATCATATCTCCTTGAAGATGTAGTTGATTTGTACCATCCAATGGCAATGAAGAAAGGTGTAGAACTTGTCTTAGACCCTTGTAATGGTTCTGTTATCAAATACTCACATGTTAAAGGTGATAGAAGAAAATTGAAGCAAGTTTTGTGTAACTTGTTAAGCAATGCTGTTAAATTTACTGATGAAGGACACATAACAGTTAGAGCATGGACTCAGAAAGCAACATTGCAAAACTCAATAATCAAGACTAACCAAAATAGTGTTGTGAAGCCTTTGTCTTGGTTGtttgataagaaaaataatgaatGTGAGGATATAGAAGCTGTTAATTCAGTTCAACATGATCCATGTTTTATGGATTTTGTATTTGAAGTTGATGATACAGGAAAAGGAATTCCTAAAGAGAATCATAAGTCAGTGTTTGAGAATTATGTTCAAGTTAAAGAGAATTCTGTTGGTCAAGTTGGAACTGGCTTAGGACTCGGGATTGTGCAGTCGTTGGTACGTTTGATGCATGGAGACATTGCAATTGTGGAAAAAGAAGTTGGCAAAAAAGGAACATGCTTCAAGTTCAATGTGCTTCTCACAACATGTGAAAATGAGACAGTAACTTATAGCTTAAGGGAAGGTTTTGAGTATGGATCAACCTCAGGTAACAAAAACCAAACTCTAGACAAAAAAACCCTTCACACTACTAGTTCTGGTTCAAGCATTTGTTCATTGAGTCCAAGATTACATATTTGTCCCTCTTCTAGTCCTAAACCTGAGCCTTCACATGTTATTCTCTTTCTTGCTgatgaagaaagaagaagaactTCACAGTTGTTCATAGAGAGCTTAGGAATTAAAGTTATAGTTGTGAAGAATAGAAAACATCTAACTCATACTCTCAAGAAGATTAAGAAACCAAAGGGTAACCAAATCAGTGATCAAAGTTCATCAGAATCTTCAGAATTAAGTTCTAGGTGTACATCTTATAGTTCTTCTTATAGTAAAAGAGTTCCTTTGAAAGCTATGGATTATGGAAATGAATTTATATCTTCAATGTTTAATAAGACAAATATTGGAGCTGCAccaagttttgttttgattatcaTTGATGCAAATGTAGGACCATTTTCTAAGCTATGTAAGATTGTGACAAATTTTAAGAAAGATGTTCTTAATCCTAGTAAAGTTGTTTGGTTGGAAAAGCCTTTTGAAAATAGTGTTGATTTTACAAAAATTGATCAAGATGATATTGTGATATCAAAACCATTTCATGGTAGTAGATTGTTTCAAGTTATAAAATTTCTTCCTGAATTTCGTGGTAATTGGAAAAGCAATAATTCTAGTAAATCAAGAAGAGAATTTAGATCACAATCTAATGATGAAAGTATGGAACAATATTGTTGGAAGGGAAATCAAAAAtcttataagggaaaaaaatatTCTGTTCATCAAGGTGAAATACAAGAATGTGGTGATTCAAGTAATTCTAAACCTTTGAGTGGAAAGAAATTTTTGGTTGCTGATGATAATCAAATGTTGAGGAAGATTGCTATGGCTACTTTGAGGTCACTTGGTGTGAGTACTATTGATCAATGTGAGAATGGTGTTGAGGCTGTGAGATTAGTTGAAGAAGGTTTAACTAAGGATTTTTCTAATCCTCCTTATGATTACATCTTAATGGATTGCCAGATGCCAGAGATGGATGGATTTGAGGCAACAAGGAAGATAAGAGAGATTGAGAAAAGATGTGGCCTTCACATTCCTATCATTGCATTATCTGCTGAAATTGACAAATTAACCACAGAGACTGGAATGGATTTTCACATAACCAAGCCTATTAAGAAGGAACATTTACTCAAAGCTATTACATGCATAGAAAATAGTGACAtaatgtaa 3300 0.3276 MALLRPSSFLILLAYGALIVIASLTPCWYILVTHIEKHVNLHSANIVSQLHSQIEYSGQILQPIKSSSTNLSRLLSSTLNSTNVTFSDVNTKVAPALFQALKTIPHLTQISYMGVDGLFFTHYKDGDQVLAMYSNSSRVASNKTIYYIQPVNRDTGEIIGEAIISNKTINIDASWINGANNISNEFVSLGTKLSNVSDLLFMNSARINRIGGISLGFSVKILTDYVTRTVDRQGTKSYLATKDGKVIAKGIQNTRLMIFNDSVSLQSLNGNGGLIKNEGIVSCKDQVDGSNLNIQDTQYLIHCYPIDIMGIESVYVLAIPQNGILSINPSYYKQKGLILMIVMMVVIFMSLLSFLFMNVGVKRREMQLCASLIKQMEATEQAERKHMNKSLAFASASHDVRAYLAGLVGLIEMSSKLVVSNSELDKPHSELETNLKQMDNCAQDLLGLLNSILDTSKIEAGKMQLEEEEFDLSYLLEDVVDLYHPMAMKKGVELVLDPCNGSVIKYSHVKGDRRKLKQVLCNLLSNAVKFTDEGHITVRAWTQKATLQNSIIKTNQNSVVKPLSWLFDKKNNECEDIEAVNSVQHDPCFMDFVFEVDDTGKGIPKENHKSVFENYVQVKENSVGQVGTGLGLGIVQSLVRLMHGDIAIVEKEVGKKGTCFKFNVLLTTCENETVTYSLREGFEYGSTSGNKNQTLDKKTLHTTSSGSSICSLSPRLHICPSSSPKPEPSHVILFLADEERRRTSQLFIESLGIKVIVVKNRKHLTHTLKKIKKPKGNQISDQSSSESSELSSRCTSYSSSYSKRVPLKAMDYGNEFISSMFNKTNIGAAPSFVLIIIDANVGPFSKLCKIVTNFKKDVLNPSKVVWLEKPFENSVDFTKIDQDDIVISKPFHGSRLFQVIKFLPEFRGNWKSNNSSKSRREFRSQSNDESMEQYCWKGNQKSYKGKKYSVHQGEIQECGDSSNSKPLSGKKFLVADDNQMLRKIAMATLRSLGVSTIDQCENGVEAVRLVEEGLTKDFSNPPYDYILMDCQMPEMDGFEATRKIREIEKRCGLHIPIIALSAEIDKLTTETGMDFHITKPIKKEHLLKAITCIENSDIM 1099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03742 1099 Gene3D - 371 462 - -
Tsu01g03742 1099 Gene3D - 949 1096 - -
Tsu01g03742 1099 MobiDBLite consensus disorder prediction 777 792 - -
Tsu01g03742 1099 Pfam Response regulator receiver domain 973 1090 IPR001789 GO:0000160
Tsu01g03742 1099 CDD REC_hyHK_CKI1_RcsC-like 972 1090 - -
Tsu01g03742 1099 ProSiteProfiles Histidine kinase domain profile. 395 668 IPR005467 -
Tsu01g03742 1099 SMART REC_2 970 1090 IPR001789 GO:0000160
Tsu01g03742 1099 MobiDBLite consensus disorder prediction 769 792 - -
Tsu01g03742 1099 PRINTS Bacterial sensor protein C-terminal signature 592 606 IPR004358 GO:0016310|GO:0016772
Tsu01g03742 1099 PRINTS Bacterial sensor protein C-terminal signature 626 644 IPR004358 GO:0016310|GO:0016772
Tsu01g03742 1099 PRINTS Bacterial sensor protein C-terminal signature 610 620 IPR004358 GO:0016310|GO:0016772
Tsu01g03742 1099 SUPERFAMILY CheY-like 968 1092 IPR011006 -
Tsu01g03742 1099 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 450 663 IPR036890 -
Tsu01g03742 1099 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 511 667 IPR003594 -
Tsu01g03742 1099 Gene3D - 463 673 IPR036890 -
Tsu01g03742 1099 SMART HisKA_10 388 461 IPR003661 GO:0000155|GO:0007165
Tsu01g03742 1099 ProSiteProfiles Response regulatory domain profile. 971 1094 IPR001789 GO:0000160
Tsu01g03742 1099 SMART HKATPase_4 511 668 IPR003594 -
Tsu01g03742 1099 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 376 463 IPR036097 GO:0000155|GO:0007165
Tsu01g03742 1099 PANTHER HISTIDINE KINASE CKI1-LIKE 34 1091 - -
Tsu01g03742 1099 PANTHER TWO-COMPONENT HISTIDINE KINASE 34 1091 - -
Tsu01g03742 1099 CDD HisKA 389 457 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03742 Tsu-Chr1 45152950 45159418 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03742 5 1083 Histidine Kinase Gene Family AT2G47430 39.295 0.0 691
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu01g03742 HATPase_c 1.1e-25 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03742 - - cam:101504256 1239.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03742 01 45152950 45159418 Tsu01g03742 01 45152950 45159418 ECH