Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03721 ATGGAGAAGAAAGAGATGGGTGTGAAGAGTGAGGATATTAATATTGATTCCTCATCTTTGCTAAATAGTTATCAATTTTCAAGTGTCTTTGATTTCTGTGAGGTAGAAAAAAGCTCTTCTTTAGGGTTTATGGAATTACTGGGTGTTCAAGATTATAGTCCTCTGCTTGATGTACCTCAACTATCAACCATGTCTATGAAAACTTCAACAGTTATAGCTTCATCTGATACTGGAAAAGACTCTTCTGAAGTTTTGAACCAGCAACAACCTGCAACTCCTAACTCTTGTTCGATTTCATCGGCATCTAGTGAAGCAGTTAATGATAATAAGACTGTTGTTGAACAAacagaagatgatgaagaagaaaagcaAAAGACCAACAAACAGTTGAAGACGaagaaaacaaatcaaaagaaacaGAGAGAACCAAGATTTGCGTTCATGACAAAAAGCGAGGTTGATCATCTCGAAGATGGTTATCGATGGAGAAAGTACGGTCAAAAAGCTGTAAAAAACAGCCCCTTTCCAAGGAGCTACTATCGTTGCACCACTGTTTCATGTAATGTGAAGAAACGTGTGGAACGTTCTTTTACTGATCCAAGTATTGTTGTCACAACTTATGAAGGCCAACATACTCATCCAAGTCCAGCTATGTCGCGTTCCGCCTTTGTCGGAGCTCAAATAGCACCACCGGACAGTTTAGTCTCCGGTGGATTTTCTACTAACTATGGCTCAGTTTTACAAGGGAATTACAATTACTTATCATCGTCACAGTATCATCAGCAACAACAGCATCAACATCAACAACTACTCTTTAATACATTGTCCTCTTTGAATCATCATCCTTATAACAATTCTTCAGCTTTTACTCAAGAGAGAAAGCTTTGTAATCAAGTGACAACTGCTGCATTTCTTAGGGATCATGGACTTCTTCAAGATGTTGTTCCTTCACATATGTTGAAAGAAGAGTAG 972 0.3663 MEKKEMGVKSEDINIDSSSLLNSYQFSSVFDFCEVEKSSSLGFMELLGVQDYSPLLDVPQLSTMSMKTSTVIASSDTGKDSSEVLNQQQPATPNSCSISSASSEAVNDNKTVVEQTEDDEEEKQKTNKQLKTKKTNQKKQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTTVSCNVKKRVERSFTDPSIVVTTYEGQHTHPSPAMSRSAFVGAQIAPPDSLVSGGFSTNYGSVLQGNYNYLSSSQYHQQQQHQHQQLLFNTLSSLNHHPYNNSSAFTQERKLCNQVTTAAFLRDHGLLQDVVPSHMLKEE 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03721 323 PANTHER WRKY TRANSCRIPTION FACTOR 1 315 - -
Tsu01g03721 323 Coils Coil 113 140 - -
Tsu01g03721 323 Pfam WRKY DNA -binding domain 157 214 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu01g03721 323 ProSiteProfiles WRKY domain profile. 151 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu01g03721 323 MobiDBLite consensus disorder prediction 111 129 - -
Tsu01g03721 323 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 1 315 IPR044810 GO:0003700
Tsu01g03721 323 MobiDBLite consensus disorder prediction 72 142 - -
Tsu01g03721 323 MobiDBLite consensus disorder prediction 72 110 - -
Tsu01g03721 323 Gene3D WRKY domain 141 217 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu01g03721 323 SMART WRKY_cls 156 215 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu01g03721 323 SUPERFAMILY WRKY DNA-binding domain 148 216 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu01g03721 323 PIRSF WRKY_txn_fact_IIc 1 323 IPR017396 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03721 Tsu-Chr1 44952517 44954189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03721 28 323 WRKY Transcription Factor Family AT2G47260 47.576 9.59e-70 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tsu01g03721 WRKY 2.7e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03721 - - gmx:732591 370.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03721 01 44952517 44954189 Tsu01g03721 01 44952517 44954189 ECH
Tsu07g04301 07 48419944 48421931 Tsu01g03721 01 44952517 44954189 PCT