Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03702 ATGGATGTTAAAGACATACTCGGATTTCAGCAGAAGAATTCTCAACCTCATAATCAGTCTCAGAGAAAACCCGATGACATTTCTCAAGAGGTGTATGCACTTACGGGTGGATTGGCACCTCTTATACCTTCAGTTGATTTGTCTCTGTTGAATAAAAGGCCTCAATCagaaaaaaagGTCATTTGGCAATGGGTTCCTTTCAAAAATTCTGCTCGTAAAGATGATCTTCAGCTATACCATTGGCAGGTTCAAGTTTTAAATGGTGTTCCACCAACAGAGGACTATTCTTTTGCCAAGTATAACAAGTCTGTTGACATAACAAAATACACAGACGAGGAGTATGAGAAATATTTGGCAAATCCTAAATGGACCAAGGAAGAAACAGATCAGTTGTTTGAGTTGTGTGAGAGATTTAATCTCCGATTTATTGTTATAGCTGATAGATTTCCATCATCTCGAACTGTTGAAGAATTAAAGGATCGATACTATAGTGTTTCCAGGGCAATATTAATTGCTAGGAATCCATCTTCTGGGGATGTTGCAGTGCATCCACTTGTTAAGGAACCATATAACGTTTCACATGAGATGGAACGGAAAAGAGCTATGTCCCTGGTGCTCTCTCAAACAAGGCAACAAGAGCGAAGAGATGAAGAGGTGCTTGCCGAAGCAAAAAGAATTGCTGAATTACGCTTAATGACCAAGGTTGCTGAAGAGGCTGAGTTGGTTGTTACTTCAAATGTTGGAGAAGGCATTACAGAGAGGGCCGACCCTGGCAAAACTGTATCTCCATCAAATATGCAACTTCCACCAACAGTTGTGCTTTCCACAATAACAACAGATAATGCATCTACTGTAGCTTCTCTCCGCATGCTTCATGTGTATTTAAGAACCTACGCACTTGAACAAATGGTGCAATCTGCAAGCTCATCAGCTGGACTTCGGACTATCAATCGTGTTGATCAAACTTTACAGGAACTTGGGGTCAGTTTGAAACCAAGGGTTCCAACAAAAGCTGTTTGTGCAGAGCATCTTGAACTCAGAAATGAAATACTAACTCTGCTGAATCTTCAGAAACAGCTGCAAAATAAGGAGGCTGAAGGTTCCTCTTTTCGTGATGGGTCACACTGTGAAACACCAGGAACACCAAAGCGTTCACATCGTGGTGGAGATCAGGATCGGACATTTGTTCCAGATAACACAAGCTCTGGGGGGGAAAGAATTGGTAAAAGGGATCAAAAGCGCAAGGCATCTGGACGACATTCAGAAGTTCCGTCATCACCAGCCCAATTGAAAAGACAGAAAAAACTATAG 1311 0.4134 MDVKDILGFQQKNSQPHNQSQRKPDDISQEVYALTGGLAPLIPSVDLSLLNKRPQSEKKVIWQWVPFKNSARKDDLQLYHWQVQVLNGVPPTEDYSFAKYNKSVDITKYTDEEYEKYLANPKWTKEETDQLFELCERFNLRFIVIADRFPSSRTVEELKDRYYSVSRAILIARNPSSGDVAVHPLVKEPYNVSHEMERKRAMSLVLSQTRQQERRDEEVLAEAKRIAELRLMTKVAEEAELVVTSNVGEGITERADPGKTVSPSNMQLPPTVVLSTITTDNASTVASLRMLHVYLRTYALEQMVQSASSSAGLRTINRVDQTLQELGVSLKPRVPTKAVCAEHLELRNEILTLLNLQKQLQNKEAEGSSFRDGSHCETPGTPKRSHRGGDQDRTFVPDNTSSGGERIGKRDQKRKASGRHSEVPSSPAQLKRQKKL 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03702 436 PANTHER DNA METHYLTRANSFERASE 1-ASSOCIATED PROTEIN 1 FAMILY MEMBER 10 435 IPR027109 GO:0006281|GO:0006338|GO:0035267|GO:0043967|GO:0043968
Tsu01g03702 436 Gene3D - 91 178 - -
Tsu01g03702 436 SMART sant 119 168 IPR001005 -
Tsu01g03702 436 MobiDBLite consensus disorder prediction 377 393 - -
Tsu01g03702 436 MobiDBLite consensus disorder prediction 364 436 - -
Tsu01g03702 436 Pfam DNA methyltransferase 1-associated protein 1 (DMAP1) 309 376 IPR008468 GO:0005634|GO:0045892
Tsu01g03702 436 Coils Coil 346 366 - -
Tsu01g03702 436 Pfam SANT/Myb-like domain of DAMP1 95 169 IPR032563 -
Tsu01g03702 436 PANTHER BNAA04G26950D PROTEIN 10 435 - -
Tsu01g03702 436 MobiDBLite consensus disorder prediction 404 420 - -
Tsu01g03702 436 MobiDBLite consensus disorder prediction 1 26 - -
Tsu01g03702 436 CDD SANT_DMAP1_like 123 165 - -
Tsu01g03702 436 MobiDBLite consensus disorder prediction 8 26 - -
Tsu01g03702 436 SUPERFAMILY Homeodomain-like 120 169 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03702 Tsu-Chr1 44786795 44793956 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tsu01g03702 DMAP1 3.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03702 K11324 - pvy:116132595 632.869