Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03700 ATGGTTCCAAGAACCTATTTCCAACTCgttttatttcttctttcatTGTTATACATCAGTTGCAGATCAAATATTGAGTCTGATTTTGAGAATTGGATATCATGGAACATGAAGAGTTACCAGAAAAAGACCATATTGGAAAAGAAATATCGGAATGTGAGTGCGATCGGGCAGGGTCTTGATTTGCAGCTGAGGCAAGCTGAGAGTAAGAAAATGAGATTAACAGTTAGCCAAAATGGTGCTGCTGATTTTAAGAGCATTACAGAAGCTGTTAATAGCATTCCACCATACAACACTAGAAGagttattttgttgatttcGCCCGGTGTTTATAGGGAGAAAATTGTGATCCCCAAAACATTGCCTTTCATAACATTCTTAGGGGATGCAAGGGATCGACCAACTATTACTGGAAATGATACAGCATCTGTTACAGGAAACGGTGGGACTCTGTTGAGGACGTTCAATAGTGCGACTGTTGCTGTGAATGCTAGCTATTTTATAGCcatcaacattaattttgagAACACCGCTTATATTCCCAATGGATCGGAAGTTGACCAAGCTGTTGCGCTTCGCATCACCGGAACCAAAGCTGCTTTTTACAATTGCTCCTTCTATGGGGTTCAAGACACTTTATATGATCACAAAGGCCTTCACTACTTCAAAAATTGCTTTATTCAAGGCTCTGTTGATTTCATTTTCGGCTATGGGAGGTCCCTTTACGAGGGTTGCACTATAAACTCCATAACCAAGAACATGACGTCCATCACGGCTCAAAAGCGTTCGAGTTCGTCATTAGATAGTGgattttcctttaaaaatagCACGGTAACAGGTAGTGGACAAGTTTACCTTGGAAGACCGTGGGGAGATTATTCAAGAGTCGTTTTCTCTTACACTTTCATGGACAAGATTGTTCTCCCCAAAGGATGGAAGGATTGGCAAGACCAAAAGCGCTACTCGAATGTATATTACGGAGAATACAAGTGCAGTGGGCCTGGATCCAACTTCACCGGAAGAGTTCCATGGGCGCGGATACTAACGGACCAAGAGGCCCAACCTTTTATTGGAATCCATTTCATTGAAGGGGAGACTTGGCTTATTAGCCCTTAA 1116 0.4005 MVPRTYFQLVLFLLSLLYISCRSNIESDFENWISWNMKSYQKKTILEKKYRNVSAIGQGLDLQLRQAESKKMRLTVSQNGAADFKSITEAVNSIPPYNTRRVILLISPGVYREKIVIPKTLPFITFLGDARDRPTITGNDTASVTGNGGTLLRTFNSATVAVNASYFIAININFENTAYIPNGSEVDQAVALRITGTKAAFYNCSFYGVQDTLYDHKGLHYFKNCFIQGSVDFIFGYGRSLYEGCTINSITKNMTSITAQKRSSSSLDSGFSFKNSTVTGSGQVYLGRPWGDYSRVVFSYTFMDKIVLPKGWKDWQDQKRYSNVYYGEYKCSGPGSNFTGRVPWARILTDQEAQPFIGIHFIEGETWLISP 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03700 371 ProSitePatterns Pectinesterase signature 2. 227 236 IPR033131 -
Tsu01g03700 371 SUPERFAMILY Pectin lyase-like 72 368 IPR011050 -
Tsu01g03700 371 Pfam Pectinesterase 74 364 IPR000070 GO:0030599|GO:0042545
Tsu01g03700 371 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 20 369 - -
Tsu01g03700 371 PANTHER PECTINESTERASE 20 369 - -
Tsu01g03700 371 Gene3D - 67 370 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03700 Tsu-Chr1 44751379 44754101 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03700 74 368 Carbohydrate Esterase AT5G47500 47.811 1.96e-94 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03700 K01051 - cit:102614801 520.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03700 01 44751379 44754101 Tsu01g03700 01 44751379 44754101 ECH
Tsu07g03939 07 45502582 45505024 Tsu01g03700 01 44751379 44754101 PCT