Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03699 ATGGATACCAATTACAAAACCAATATTCATGTAATGAGGAGTTTATCAGATTGTGGTTCTTCAGAAGCAAATGTAAGTGAAGAAGATACTATGGTAATAAAGAAAGGTCCATGGACAGAGGATGAAGATGCTATTCTGATGAACTATGTGGCTGTTCATGGTGAAGGTCATTGGAACTCTGTTGCTCGTTGTTCGGGTCTAAAGCGAACTGGGAAAAGTTGTAGATTAAGATGGTTGAACTACTTACGTCCAAATGTTCGACGTGGGAATATCACTTTACAAGAACAGATCTTGATTCTTGATCTCCATTCGCGTTGGGGCAACCGGTGGTCTAAAATAGCGGAACAATTGCCAGGAAGAACAGACAATGAGATAAAGAACTATTGGAGGACAAGAGTGGTGAAGCAAGCTAGACAACTCAAATGTGATGTAAACAGCAAACAGTTTAGGGACATGTTGCGTTATGAATGGATTCCACGTCTCATCGAGAGAATCCAATCTACTTGCACAACTGCAGATACTAATTCTTATGGCCAGACACAAACCACCAATTGCAATAATACTAAAGCTCATAGTGACACGTGTGGTGCAAATGCAAATCCTCCCATGTTGTCGTCTGAGGTTTCATCGTACTCCTCGGAGGTTGATGTTTTAGTCGAATCAAACATATCTAATTACAATTTAATGGAAAGTCCGGAGTTCGGATCCACGTGGCAGGAGTGGAATTGCTTAGACTCAAACATACAAGAATTTGAACAGAATGGTGTTTTTGGTGGTTCAGAATTATGGACAGATGAAAACATATGGTTCTTGCAGCAGCAACTTGCTGATGATTTAtga 840 0.4012 MDTNYKTNIHVMRSLSDCGSSEANVSEEDTMVIKKGPWTEDEDAILMNYVAVHGEGHWNSVARCSGLKRTGKSCRLRWLNYLRPNVRRGNITLQEQILILDLHSRWGNRWSKIAEQLPGRTDNEIKNYWRTRVVKQARQLKCDVNSKQFRDMLRYEWIPRLIERIQSTCTTADTNSYGQTQTTNCNNTKAHSDTCGANANPPMLSSEVSSYSSEVDVLVESNISNYNLMESPEFGSTWQEWNCLDSNIQEFEQNGVFGGSELWTDENIWFLQQQLADDL 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03699 279 PANTHER MYB TRANSCRIPTION FACTOR-RELATED 21 273 - -
Tsu01g03699 279 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
Tsu01g03699 279 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 21 273 IPR044676 GO:0003700|GO:0006355|GO:0043565
Tsu01g03699 279 SMART sant 34 84 IPR001005 -
Tsu01g03699 279 SMART sant 87 135 IPR001005 -
Tsu01g03699 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 86 IPR017930 -
Tsu01g03699 279 CDD SANT 92 131 IPR001005 -
Tsu01g03699 279 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 137 IPR017930 -
Tsu01g03699 279 Pfam Myb-like DNA-binding domain 88 131 IPR001005 -
Tsu01g03699 279 Pfam Myb-like DNA-binding domain 35 82 IPR001005 -
Tsu01g03699 279 SUPERFAMILY Homeodomain-like 33 129 IPR009057 -
Tsu01g03699 279 Gene3D - 92 133 - -
Tsu01g03699 279 Gene3D - 32 88 - -
Tsu01g03699 279 CDD SANT 37 82 IPR001005 -
Tsu01g03699 279 ProSiteProfiles Myb-like domain profile. 30 82 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03699 Tsu-Chr1 44734791 44735792 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03699 21 278 MYB Transcription Factor Family AT2G47190 48.496 1.96e-78 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu01g03699 Myb_DNA-binding 1.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03699 K09422 - gmx:778040 328.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03699 01 44734791 44735792 Tsu01g03699 01 44734791 44735792 ECH