Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03698 ATGAGAGGTATGGATATTAAGATTAAGAAAAGTGATGATTCTGCAAAGCTCAATGAATTAAGAAAAGGTCCATGGACATTAGAAGAAGACACCATTTTGGTTAATTACATTTCAACCCACGGTGAAGGTCACTGGAATACATTGGCATGTTCTGCAGGTCTTAGGAGAAATGGGAAAAGTTGCAGATTAAGGTGGTTAAACTACTTGCGTCCCGATGTACGCCGTGGAAATATCACACTCCAAGAACAGATTTTGATTCTTGACCTCCACTCTCGCTGGGGCAATAGgTGGTCGAAAATTGCACAACATTTACCAGGAAGAACGgacaatgaaataaaaaattattggagGACAAGAGTGATCAAGCAGGCAAAGCAACTCAAGTGTGATGTTAACAGCAAACAGTTCAAAGACGTCTTGCGTTACGTCTGGATGCCCCGTTTGCTTGAACAGGTTCAACATGTACCCGAAACCCCTGACCCGAATTCGAATAACCTGAACCGACCAAATTTCATTCTTAACCAAAACACATTGCAAAGTTCAGTTTCGGAAACAGAGTGgccaaaatcaaacaattcttCAACTGCTAGTCCTATTTCCTCGAACTCGTCATCAGTTGAATTTCAAGTTTCTTCGAATTCGGAACTGTTGGGTCATGATGGCTCGAAACTATGGTCAAGTTTTAATAACCAGGTTTCAGAACAGGGGaatagtggtggtggtggtggtggtgactCATTGGAGAATTTGTGGAACGATGAGAACATGTGGTTTTTGCAACAACTTTCTGATGATCttgaaataaaatacaattacCTTGCGTGA 825 0.3721 MRGMDIKIKKSDDSAKLNELRKGPWTLEEDTILVNYISTHGEGHWNTLACSAGLRRNGKSCRLRWLNYLRPDVRRGNITLQEQILILDLHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVIKQAKQLKCDVNSKQFKDVLRYVWMPRLLEQVQHVPETPDPNSNNLNRPNFILNQNTLQSSVSETEWPKSNNSSTASPISSNSSSVEFQVSSNSELLGHDGSKLWSSFNNQVSEQGNSGGGGGGDSLENLWNDENMWFLQQLSDDLEIKYNYLA 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03698 274 MobiDBLite consensus disorder prediction 227 242 - -
Tsu01g03698 274 Gene3D - 79 120 - -
Tsu01g03698 274 SUPERFAMILY Homeodomain-like 20 116 IPR009057 -
Tsu01g03698 274 CDD SANT 24 69 IPR001005 -
Tsu01g03698 274 MobiDBLite consensus disorder prediction 182 203 - -
Tsu01g03698 274 Gene3D - 22 74 - -
Tsu01g03698 274 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Tsu01g03698 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 69 IPR017930 -
Tsu01g03698 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Tsu01g03698 274 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Tsu01g03698 274 PANTHER MYB TRANSCRIPTION FACTOR-RELATED 12 261 - -
Tsu01g03698 274 SMART sant 21 71 IPR001005 -
Tsu01g03698 274 SMART sant 74 122 IPR001005 -
Tsu01g03698 274 MobiDBLite consensus disorder prediction 227 247 - -
Tsu01g03698 274 CDD SANT 79 118 IPR001005 -
Tsu01g03698 274 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Tsu01g03698 274 Pfam Myb-like DNA-binding domain 75 118 IPR001005 -
Tsu01g03698 274 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 12 261 IPR044676 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03698 Tsu-Chr1 44715000 44716155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03698 18 272 MYB Transcription Factor Family AT2G47190 50.185 4.15e-78 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu01g03698 Myb_DNA-binding 2.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03698 K09422 - gmx:778065 297.36