Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03697 ATGCAAGGACAAGACAATGTTGTCTTAGCAGACAACATTTTTCAATATAGCATGTTCAGTACTGGAATTGTCCTCCAAAATTGCTCCATCATGCCCGATGTTGAGTTGAAGCCTTATTTGCAAACAATGAAGACATACTTGGCAAGACCATGGAAGCCATTTTCAACGGCAGTTTTCCTTAACAAATACATCGATGATTTTGTTCAACGAGACGAGTATATGATATGGAACAAGACTCAACCAAACACAGAACACTCTTATTTTGCTGAGTTTGAAAATATTGGACCTGATGCCGATTACAACAAGGGTAAAATGGGCAAAAGGCCTTATTAG 333 0.3844 MQGQDNVVLADNIFQYSMFSTGIVLQNCSIMPDVELKPYLQTMKTYLARPWKPFSTAVFLNKYIDDFVQRDEYMIWNKTQPNTEHSYFAEFENIGPDADYNKGKMGKRPY 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03697 110 Gene3D - 2 108 IPR012334 -
Tsu01g03697 110 SUPERFAMILY Pectin lyase-like 6 102 IPR011050 -
Tsu01g03697 110 Pfam Pectinesterase 1 101 IPR000070 GO:0030599|GO:0042545
Tsu01g03697 110 PANTHER PECTINESTERASE 1 100 - -
Tsu01g03697 110 PANTHER PECTINESTERASE 1 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03697 Tsu-Chr1 44705693 44706025 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03697 3 98 Carbohydrate Esterase AT3G62170 40.625 3.68e-18 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03697 - K01051 gmx:100808559 105.145