Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03688 atgaGGCACTCTTCTATTTTTCCAATATTATTCTCTATATATtttgttacattatttttttctatacaAGCTAGACATCATTTTCATACTAAACATAAACACTACTCACATTCTCATAAGTCATCATCTGAAATTTCATTATCTCCTTCTCCATTACCTTCACCATATTATAGTTCTCCTGAAGAAGCTCCTAGTCTTGCTCCTAGTAGTCCTTTTGAAGAAGCTCCTAGTCCTTCACCTACTAGTGATGAGAATAATTACCAAAATGTATCTGGATTGTTTGATGTAAGAAAATTTGGTGCCATTGGAGATGGAATAACTGATGATACTGAGTCTTTTAAAATGGCTTGGGACACTGCTTGTCAAAGTGAATTACCACTTAATGTTATCTTTGTTCCTAATGGTTTTTCCTTCATTGTTCAATCTAGTATCTTCACTGGTCCTTGTAAAGGTGGTTTAGTATTAAAGAAGGTTGATGGCACTATAATGACACCTGATGGACCTGAATCTTGGCTAAAAAACAACAGCAAGCGTCAATGGTTGGTCTTTTATAGAGTCAATGGTTTGTCACTTGAAGGAAGTGGTTCTATTGATGGCAGAGGACAAAAATGGTGGGACCTTCCTTGTAAGCCTCATAAGGGGCCTAATGGAACAACATTGGCAGGACCTTGTGACAGCCCAGTTGCTATAAGGTTTTTCATGAGTTCAAATTTGACAGTACAAGGACTTAGGATAAAAAACAGTCCTCAATTCCATTTCAGATTTGATGGTTGCCAAAGTGTCCATATTGATTCAATTTTCATAACAGCTCCAGCATTAAGTCCTAACACTGATGGAATACACATAGAAAATACTAATGATGTCAAAATTTATAATTCCATCATTTCCAATGGTGATGACTGTGTTTCCATTGGAACTGGTTGCTTTGATGTTGACATAAAAAACATCACATGTGGACCAGGTCATGGGATTAgcATTGGTAGTTTGGGAAACCACAACTCAAAAGCATGTGTATCAAACATAACAGTGAGGGACTCAGTTATAAAGTTATCAGATAATGGTGTTAGAATTAAGACATGGCAAGGTGGATCAGGATCAGTATCCGGAGTAACATTCAATAACATTCACATGGATACAGTAAAAAATCCAATTATAATTGACCAATTTTACTGCTTAAGTAAAGATTGCAGCAACAAAACCTCTGCAGTATTTATATCAGATATAGTTTACACAAGTATAAAAGGAACTTATGATATAAGACACCCCCCTATGCATTTTGCATGCAGTGACTCTATACCTTGCACTAACTTAACTCTCTCAGATATTGAGCTTTATCCTTCTCAAGGAGATATATTGAATGATGCTTTTTGTTGGAATGCTTATGGAAATTCAGAGACATTAACCATTCCACCAGTTTTTTGCTTGCTGGATGGTGTTCCTCAGTCTATTCCAGCAAATGATATTGAGCATTGCTGA 1476 0.3557 MRHSSIFPILFSIYFVTLFFSIQARHHFHTKHKHYSHSHKSSSEISLSPSPLPSPYYSSPEEAPSLAPSSPFEEAPSPSPTSDENNYQNVSGLFDVRKFGAIGDGITDDTESFKMAWDTACQSELPLNVIFVPNGFSFIVQSSIFTGPCKGGLVLKKVDGTIMTPDGPESWLKNNSKRQWLVFYRVNGLSLEGSGSIDGRGQKWWDLPCKPHKGPNGTTLAGPCDSPVAIRFFMSSNLTVQGLRIKNSPQFHFRFDGCQSVHIDSIFITAPALSPNTDGIHIENTNDVKIYNSIISNGDDCVSIGTGCFDVDIKNITCGPGHGISIGSLGNHNSKACVSNITVRDSVIKLSDNGVRIKTWQGGSGSVSGVTFNNIHMDTVKNPIIIDQFYCLSKDCSNKTSAVFISDIVYTSIKGTYDIRHPPMHFACSDSIPCTNLTLSDIELYPSQGDILNDAFCWNAYGNSETLTIPPVFCLLDGVPQSIPANDIEHC 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03688 491 PANTHER - 82 481 - -
Tsu01g03688 491 SMART pbh1 235 284 IPR006626 -
Tsu01g03688 491 SMART pbh1 285 306 IPR006626 -
Tsu01g03688 491 SMART pbh1 338 359 IPR006626 -
Tsu01g03688 491 SMART pbh1 367 388 IPR006626 -
Tsu01g03688 491 SMART pbh1 308 328 IPR006626 -
Tsu01g03688 491 SUPERFAMILY Pectin lyase-like 93 477 IPR011050 -
Tsu01g03688 491 ProSitePatterns Polygalacturonase active site. 315 328 IPR000743 GO:0004650|GO:0005975
Tsu01g03688 491 Gene3D - 80 474 IPR012334 -
Tsu01g03688 491 MobiDBLite consensus disorder prediction 39 86 - -
Tsu01g03688 491 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 82 481 - -
Tsu01g03688 491 Pfam Glycosyl hydrolases family 28 127 445 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03688 Tsu-Chr1 44599427 44602406 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03688 82 491 Glycoside Hydrolase AT1G02460 70.702 0.0 622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03688 - - gmx:100792285 771.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03688 01 44599427 44602406 Tsu01g03688 01 44599427 44602406 ECH
Tsu07g04314 07 48518144 48526114 Tsu01g03688 01 44599427 44602406 PCT