Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03681 ATGAACAACATGAAAAACATCAGTCTTTTTACACTCTTGAGTTTCAATCGTGGACAAGCATGTCTCACTTTGTTACTTGTTATTACTCTCGTACAAATCTTACCGCTGGTGACCGGTCAACCACTAGGACCGGAAGATCCAGCGGAGAACAACAAATCAATAGCCACCATCATTGAAATTCTAGCCGTTATGATTCTCTTCTCCGGTTTTCTTTCTCTATACTCATCCAAATGCAGTGATCGTCAACAAGGGGTTATTTTCGACCTCAGTTTACCTACTGGTGGAAGTGGTCTCCGGGCGCAAAACAATGAGCCAAGTAACGGTCTCAACCAAGATGTTATCGACACATTTCCAACTTTTCGTTACTCCAACGTGAAGGGACTCAAGATTGGAAAAAGCACTTTGGCTTGTGCTATTTGCTTGAATGAGTTTCAAGACGATGAAACATTACGTTTAATCCCTAAATGTAGCCATGTGTACCACCATGGTTGCATTGATATTTGGCTTGTTTCTCATAATACTTGCCCTGTTTGTCGTGCCAACCTTGATCCAAGATCTGACGATACTATTGTGCCTCCAACTATAACCATTCAAATACCAGAAGGAGAATCACATCATAATGAGCAAGACGAGGAAGAGGTAGAACATGGTATTCAAGAGGAACAAAAGAGAGACAACATTGAAGTTGAATATTCAACTAAGGTTAATTTACTTCGTAGGTCTCACACATATTGTGCATCAACACGATCAAAATCTACAGGATGCTTATCTGTTATCTTGTTGTCACGGTCGAATTCAACGGGTGTGTTGGTGCAACCAGGTGAGGATTGTGAGAGGTTTACATTGAGGTTACCTAATAAAGTACGACATCAACTGATGATGAATACAACGACACATAAGCGTGCACAAAGTTGTGTGAGTTTTACGAGAATGAGCAGTGGCACATGCGGTTATAGGTCAAAAAGCGTTGGGTGTGGAAGTGGGTGGGGCTACATGCATTATGAAAGGTTTGGAAGTGAGGAGGAAGATACCTTAGGGTTCGTTAGAAATAGTTGGAAGAATAAATCCGTTATAAAATCTCCGGTGAAGTGTTTGGAAGTTAATATGGACAACTATGGAGGTGAGCGATCATCTGATCTTTTATTTCCTGTGTAG 1155 0.4104 MNNMKNISLFTLLSFNRGQACLTLLLVITLVQILPLVTGQPLGPEDPAENNKSIATIIEILAVMILFSGFLSLYSSKCSDRQQGVIFDLSLPTGGSGLRAQNNEPSNGLNQDVIDTFPTFRYSNVKGLKIGKSTLACAICLNEFQDDETLRLIPKCSHVYHHGCIDIWLVSHNTCPVCRANLDPRSDDTIVPPTITIQIPEGESHHNEQDEEEVEHGIQEEQKRDNIEVEYSTKVNLLRRSHTYCASTRSKSTGCLSVILLSRSNSTGVLVQPGEDCERFTLRLPNKVRHQLMMNTTTHKRAQSCVSFTRMSSGTCGYRSKSVGCGSGWGYMHYERFGSEEEDTLGFVRNSWKNKSVIKSPVKCLEVNMDNYGGERSSDLLFPV 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03681 384 PANTHER RING FINGER DOMAIN-CONTAINING 1 324 - -
Tsu01g03681 384 CDD RING-H2_EL5_like 137 179 - -
Tsu01g03681 384 SMART ring_2 137 178 IPR001841 -
Tsu01g03681 384 SUPERFAMILY RING/U-box 131 185 - -
Tsu01g03681 384 Pfam Ring finger domain 136 179 IPR001841 -
Tsu01g03681 384 ProSiteProfiles Zinc finger RING-type profile. 137 179 IPR001841 -
Tsu01g03681 384 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 185 IPR013083 -
Tsu01g03681 384 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03681 Tsu-Chr1 44565645 44566799 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03681 22 295 Rapid Response to Elicitors AT3G05200 40.357 4.46e-50 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03681 K10664 - gmx:100814384 318.161