Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03680 ATGGAGGCTAGATTGGGTGGTGAAGGTTATCATTTTTATGGTGTTGGTGGTTCATCTGAATTGACTAGTATGGGAAAGAGGTCAAGAGAATGGAATTTGAATGATTGGAGATGGGATGGTGATTTGTTTTTAGCTAGCCGTGTGAATCCGGTGCCGGCGGAAGCTATGAGAGTAGGACAGCAGTTTTTCCCTCTCGGCTCTGGGATCTCGGTGGCTGGGGGTTCGTCTAATACCTCGTCTTCGTGCTCTGAGGAAGGAGATCTAGAGAATCATAAAAGAGATAAGGAAGGGGAGAAGAAAAGGAGAGTTATTGTGTTGGAAGAGGATGGTTTGAATGAGGAAGCTGGTGCTCTTAGTTTAAATCTTGCTGGACATGCTTCGCCGGTGGTGGAAAGGGAGATTGTAACATGGGATGGTGTGAATGGGAAAAAGGGGAGAGTAGCTGGAGGTACTCCGAATCGAGCTGTTTGTCAGGTTGAAGATTGTGGTGCAGATCTGAGTAGAGGTAAGGATTATCACAGACGCCATAAGGTTTGTGAGATGCATTCGAAGGCTAGTAGGGCGCTTGTGGGAAATGCAATGCAGAGGTTTTGTCAACAGTGTAGTAGGTTTCACATACTTCAAGAGTTCGATGAAGGAAAGAGAAGCTGTCGGAGACGCTTGGCTGGCCACAATAAACGGAGAAGGAAAACAAATACTGAAGCTGTTCCTAATGGAAGTCCAACAAATGATGATCAGACTAGTAGTTATCTGTTGATAAGTTTGTTGAAGATACTTTCAAATATGCATTCTGACAGGTCAGATCAGATTACAGATCAGGATCTACTAACTCATCTTCTAAGGAGTCTTGCTAGTCAGAATGATCAACAAGGGATCAGAAACCTTTCAAACCTTTTGCGGGAACAAGAGAATTTGTTGAGAGAAGGGGGTTCTTCTAGGAAGTCAGAGATGGTGTCAGCTTTATTCTCCAATGGTTCTCAAGGCTCTCCAACTGATATAACACAACATCAAACTGTATCTATTAATAGAATGCAGCAAGAAATAATGCATTCACATGATGTTAGGACCACTGATCATCAACTCATATCTTCAATAAAGCCCAGCATTTCAAACAGTCCACCGGCTTACTCAGAAGCCAGAGATAGTAGTGCACAAATaaagatgaacaattttgatttgaaCGACATATATATTGACTCAGATGATGGCACGGAAGATCTAGAAAGATTGCCCGTCTCTACAAATCATGTCACTAGCTCTGTCGACTACCCATGGGCACAACAAGATTCTCATCAGTCAAGTCCACCTCAAACAAGTGGAAATTCAGATTCTGCATCTGCCCAGTCCCCTTCTAGTTCTAGCGGAGAAGCTCAGAGTCGCACAGACCGAATTGTTTTTAAACTCTTTGGTAAAGAGCCGAATGAATTTCCTCTTGTACTTAAATCACAGATTCTTGATTGGCTATCCCACAGTCCTACCGATATTGAGAGCTACATACGGCCTGGTTGTATTGTTTTGACTATGTATCTGCGTCAGGCGGAGGCTGTTTGGGAGGATCTTTGCTGTGATCTGACTTCCAGTTTGAATAAGCTGCTGGATGTCTCTGATGATACATTTTGGAGTACTGGATGGATTCATATTAGGGTGCAGCATCAAATGGCATTCATTTTCGATGGTCAAGTTGTCATTGATACATCACTACCTTTTAGAAGTAACAATTATAGCAAAATTTGGACTATTAGTCCAATTGCTGTACCAGCATCAAAGAGAGCTCAATTTTCTGTTAAAGGTGTCAACCTGATGCGCCCTGCCATGAGGTTAATGTGTGCTTTAGAAGGGAAATATCTGGTCTGTGAAGATGCTCATGAGTCAACGGATCATTACTCCAAGGAGCTTGATGAACTTCAGTGCATCCAATTTTCATGTTCTGTTCCTGTGACGAATGGAAGAGGATTTATTGAGATTGAGGACCAGGGTTTGAGTAGCAGCTTCTTTCCTTTCATAGTGGCAGAAGAGGATGTTTGCTCAGAGATCTGTGTGCTTGAGCCTTTACTAGAATTAAGTGAAACTGATCCAGATATTGAAGGGACTGgaaaaatgaaagataaaaGTCAAGCTATGGATTTCATTCATGAAATGGGCTGGCTTCTTCACAGAAGCCAATTGAAATATAGGACGGTTCACTTGAACTCTGCTGTAGATCTCTTTCCATTAGAACGGTTCACATGGCTTATGGAGTTTTCCATGGACCATGATTGGTGTGCAGTGGTGAAAAAACTGTTGAACCTACTGCTTGATGAAACTGTGAATAAAGGAGATCACCCTACCCTGTATCAAGCACTTTCGGAGATGGGTCTCCTTCACCGAGCTGTAAGGAAAAATAGCAAGCAGTTAGTGGAGCTGCTTTTGAGATATGTTCCTGACAAAGCACCAGTTGATGGAGATAATCATAACTTCTTGTTTAGACCTGATGCTGTTGGTCCTGCTGGTTTGACACCCCTCCATATAGCAGCGGGAAAAGATGGTTCCGAAGATGTACTGGAGGCTCTGACTGGTGATCCTAGCATGGTGGGAATTGAAGCATGGAAGAGTGCCCGTGACAGCACAGGCTCCACACCTGAGGATTATGCACGATTACGTGGCCATTATACTTACATTCACTTAGtgcagaaaaaaattaacaagagaCAAAGAGCACCTCATGTGGTGGTTGAGATTCCCAGCACTCCGACAGACAACAATGCAAACCCAAAGCAAAATGAGTCGTCTACTAGCTTTGAGATTGGAAAAGCTGAAGTAAGACGCGGTCAAGGGAACTGTAAACTTTGTAATACTAAAATATCTTGTAGAACTGCAGTAGGAAGGTCTATGGTATACAGACCTGCAATGCTCTCCATGGTGGCCATAGCAGCAGTCTGTGTTTGTGTGGCTCTTTTGTTTAAAAGCTCACCTGAAGTTCTGTACATGTTCCGACCATTCAGATGGGAATCATTGGATTTCGGAACAAGCTAA 3012 0.4246 MEARLGGEGYHFYGVGGSSELTSMGKRSREWNLNDWRWDGDLFLASRVNPVPAEAMRVGQQFFPLGSGISVAGGSSNTSSSCSEEGDLENHKRDKEGEKKRRVIVLEEDGLNEEAGALSLNLAGHASPVVEREIVTWDGVNGKKGRVAGGTPNRAVCQVEDCGADLSRGKDYHRRHKVCEMHSKASRALVGNAMQRFCQQCSRFHILQEFDEGKRSCRRRLAGHNKRRRKTNTEAVPNGSPTNDDQTSSYLLISLLKILSNMHSDRSDQITDQDLLTHLLRSLASQNDQQGIRNLSNLLREQENLLREGGSSRKSEMVSALFSNGSQGSPTDITQHQTVSINRMQQEIMHSHDVRTTDHQLISSIKPSISNSPPAYSEARDSSAQIKMNNFDLNDIYIDSDDGTEDLERLPVSTNHVTSSVDYPWAQQDSHQSSPPQTSGNSDSASAQSPSSSSGEAQSRTDRIVFKLFGKEPNEFPLVLKSQILDWLSHSPTDIESYIRPGCIVLTMYLRQAEAVWEDLCCDLTSSLNKLLDVSDDTFWSTGWIHIRVQHQMAFIFDGQVVIDTSLPFRSNNYSKIWTISPIAVPASKRAQFSVKGVNLMRPAMRLMCALEGKYLVCEDAHESTDHYSKELDELQCIQFSCSVPVTNGRGFIEIEDQGLSSSFFPFIVAEEDVCSEICVLEPLLELSETDPDIEGTGKMKDKSQAMDFIHEMGWLLHRSQLKYRTVHLNSAVDLFPLERFTWLMEFSMDHDWCAVVKKLLNLLLDETVNKGDHPTLYQALSEMGLLHRAVRKNSKQLVELLLRYVPDKAPVDGDNHNFLFRPDAVGPAGLTPLHIAAGKDGSEDVLEALTGDPSMVGIEAWKSARDSTGSTPEDYARLRGHYTYIHLVQKKINKRQRAPHVVVEIPSTPTDNNANPKQNESSTSFEIGKAEVRRGQGNCKLCNTKISCRTAVGRSMVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYMFRPFRWESLDFGTS 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03680 1003 MobiDBLite consensus disorder prediction 907 927 - -
Tsu01g03680 1003 SUPERFAMILY SBT domain 155 235 IPR036893 GO:0003677|GO:0005634
Tsu01g03680 1003 ProSiteProfiles Zinc finger SBP-type profile. 154 231 IPR004333 GO:0003677
Tsu01g03680 1003 Pfam SBP domain 157 230 IPR004333 GO:0003677
Tsu01g03680 1003 Gene3D - 754 904 IPR036770 -
Tsu01g03680 1003 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 17 1002 - -
Tsu01g03680 1003 MobiDBLite consensus disorder prediction 74 97 - -
Tsu01g03680 1003 MobiDBLite consensus disorder prediction 424 459 - -
Tsu01g03680 1003 MobiDBLite consensus disorder prediction 222 245 - -
Tsu01g03680 1003 MobiDBLite consensus disorder prediction 906 927 - -
Tsu01g03680 1003 Gene3D - 148 218 IPR036893 GO:0003677|GO:0005634
Tsu01g03680 1003 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 1002 IPR044817 GO:0003677
Tsu01g03680 1003 SUPERFAMILY Ankyrin repeat 761 888 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03680 Tsu-Chr1 44555645 44563261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03680 1 1003 SBP-box Gene Family AT3G60030 55.327 0.0 972
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Tsu01g03680 SBP 1.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03680 - - gmx:100809806 1638.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03680 01 44555645 44563261 Tsu01g03680 01 44555645 44563261 ECH