Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03678 atgagcGGAAAAGTAATAGTTTCTGGTGTATCCCTCATTCTTGTGGTGGGTGTTGCCATCGGTGTCGTGTGCGTTGTCAACAAAACTGGTAATGATCCTGCATTAGCAGCACATCAAAAAAATGTGCAATCCATTTGTTCTGCAACTGAAGATCAAAAACTTTGTCAAGACACTCTTGGCTCCGCGAAACCAACCAATGATTCTGACCCAACGGCTTATTTAGCAGCTGCAGTTGAAGCAAGTGCAAAAAGCGTTATCCTTGCCTTGAATATGAGTGATCAGTTAAAAGTTGAACATGACAACGGCGAACCTGGTATCAAAATGGCTCTTGATGATTGCAAAGACTTGATGCAATTTGCTCTTGATAGTCTTGAGTCATCGGCTAATTTGGTTCGCGATAACAATGTTCAAGGGATTCATGATCAAACACCTGACTTTAGGAACTGGTTGAGTGCTGTTATCTCGTACCAAGAATCATGCACGGAAGGGTTCAATAATGGGACCGGAGAGGATCAGGTAAAGAAACAGTTGCAAACAGAAAGTTTGGATAAAATGGAGAAGCTAACTGGAATTACACTTGACATTGTAACAAGTATGGTTCATCTCCTTCAGAGTTTCGACTTGAAACTAGATTTGAATCCAGCTTCTCGTCGTCTTCTGGAGGTTAATGAGCTTGACAATGAAGGATTGCCCAAGTGGTTCTCGGCTGCGGATCGTAAGCTCTTGGCCAAGgtaggtggtggtggtggtggtggaggaggaggagcTCCTGCACCAAATGCAGTAGTTGCTAAAGATGGAAGTGGTCAATTTAAAACAGTTAAAGCGGCTATTGACTCATATCCTAAGGGCTTCAAAGGCAGATTCATTATTTATGTTAAGGCCGGAGTCTATGACGAATACATCACCGTTCCCAAAACAGCAATCAATATTCTTATGTATGGCGATGGTCCTACAAAGAGTATTATCACCGGTCACAAAAACTTCGTCGATGGCGTGAAAACAATGCAAACTGCCACTTTTGCAAATGTTGCAAATGGATTCATTGCAAAGTCAATAGCATTCGAGAACACAGCTGGATGGGAAAAACATCAAGCAGTGGCGTTTAGAAACCAAGGAGATATGTCAGCATTCTTCGACTGCGCCATGCACGGCTACCAAGACACATTATATGTTCAAGCCAATCGTCAATTCTACCGCAACTGTGAAATATCCGGTACCATAGACTTCATATTCGGCGCATCTCCAACCATAATTCAAAACTCTAAAATTATCGTACGAAAGCCAGGACCAAGTCAATTCAACACCGTAACCGCAGACGGCACAAAACAACGAAACATGGCCACTGGAATTGTGCTCCAGAATTGCCAAATCACCGCAGAGAGGGAATTGTTCCCGGTTAAGAACCAACTCAAATCATATTTGGGTAGGCCATGGAAAGAATATGCCAAGACAGTTGTTATGGAATCTACCATTGATGATTTTCTTGCACCAGAAGGGTGGACTCCATGGGAAGGAAATTTGTATCTTAATACATTGTATTATGCTGAATTTGCTAATACTGGACCTGGTGCTAGTCTTAATGGAAGAGTTAAGTGGAAAGGTTATCGTCCTAACATTAATAAGAATGAAGCTGCTCAATTCACTGCAGAACAATTCCTTAAAGCTGGACCTACTGGAAGAGCTGATGATTGGTTGAAGGCAACTGGTATTCCTTATACACTTGGATTTGAAAAAGCttga 1743 0.4073 MSGKVIVSGVSLILVVGVAIGVVCVVNKTGNDPALAAHQKNVQSICSATEDQKLCQDTLGSAKPTNDSDPTAYLAAAVEASAKSVILALNMSDQLKVEHDNGEPGIKMALDDCKDLMQFALDSLESSANLVRDNNVQGIHDQTPDFRNWLSAVISYQESCTEGFNNGTGEDQVKKQLQTESLDKMEKLTGITLDIVTSMVHLLQSFDLKLDLNPASRRLLEVNELDNEGLPKWFSAADRKLLAKVGGGGGGGGGGAPAPNAVVAKDGSGQFKTVKAAIDSYPKGFKGRFIIYVKAGVYDEYITVPKTAINILMYGDGPTKSIITGHKNFVDGVKTMQTATFANVANGFIAKSIAFENTAGWEKHQAVAFRNQGDMSAFFDCAMHGYQDTLYVQANRQFYRNCEISGTIDFIFGASPTIIQNSKIIVRKPGPSQFNTVTADGTKQRNMATGIVLQNCQITAERELFPVKNQLKSYLGRPWKEYAKTVVMESTIDDFLAPEGWTPWEGNLYLNTLYYAEFANTGPGASLNGRVKWKGYRPNINKNEAAQFTAEQFLKAGPTGRADDWLKATGIPYTLGFEKA 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03678 580 PANTHER PECTINESTERASE 3 578 - -
Tsu01g03678 580 ProSitePatterns Pectinesterase signature 2. 404 413 IPR033131 -
Tsu01g03678 580 PANTHER PECTINESTERASE 3 578 - -
Tsu01g03678 580 CDD PMEI-like_3 44 199 - -
Tsu01g03678 580 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 199 IPR035513 -
Tsu01g03678 580 SMART PMEI_2 37 195 IPR006501 GO:0004857
Tsu01g03678 580 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 200 IPR035513 -
Tsu01g03678 580 SUPERFAMILY Pectin lyase-like 256 575 IPR011050 -
Tsu01g03678 580 TIGRFAM PME_inhib: pectinesterase inhibitor domain 20 198 IPR006501 GO:0004857
Tsu01g03678 580 Pfam Pectinesterase 260 555 IPR000070 GO:0030599|GO:0042545
Tsu01g03678 580 Pfam Plant invertase/pectin methylesterase inhibitor 41 195 IPR006501 GO:0004857
Tsu01g03678 580 Gene3D - 256 577 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03678 Tsu-Chr1 44526101 44528290 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03678 5 577 Carbohydrate Esterase AT3G05610 40.620 3.92e-140 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03678 K01051 - gmx:100775246 857.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03678 01 44526101 44528290 Tsu01g03678 01 44526101 44528290 ECH