Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03677 atgggaaGTCAAGTACTTGTTTCAGCTGTTTCTCTCATTCTTGTAGTAGGTGTTGCCATAGGTGTTGTTTGCGTTGTCAATCGAACATCGGACAAACCCGGTGACGATGGTCAATTGAATACACATACTAAAGCTGTTCAAGCTGTGTGTCAAGgtagtgatgataaaaaattttGTGTTGACACTCTTAGTCCTGTTAATACCTCAGACCCGAATGATTATATAAAAGCCGTGGTTAAAACATCGATGGAAAGTGTCATAAAAGCCTTCAACATGAGCGATACGCTCGCAGTTGAAAATGACAAAGATAATGCGACTGTAAAAATGGCGCTTGATGATTGTAAAGATTTGTTACAATCCGCGATTCAAGAATTGGCAGCCTCGGATGTTTTAATTCATGATAACAATGCTCAAAACGTTACTACACGTACCGCGGAGCTTAAAAATTGGTTAGGTGCTGTTGTTGCTTACCAACAATCGTGTCTTGACGGTTTTAATACCGATGGTGAAAAGCAGGTTCAGTCGCAATTGCAGACAGGTAGTTTGGATGATGTAGGAAAACTTACGGCATTAGCACTTGATGTTGTGTCTGCGGTTGCGAAAGTACTTTCTGCATTCAACTTGGATTTGGATGTGAAATCTGCGTCTCGTAGGCTTTTTGAAGCGGATCAAGACGAAGAGGGTAACCCTGAATGGATGTCTGCTGCAGATCGTAAGCTAATGGCTGATATGAGTACCGGAATGAGTGTTACGCCTAATGTGGTTGTTGCCAAAGATGGTAGTGGTCAATTTAAAACGGTTCTTGATGGTATTAATTCTTATCCGAAAAATCACCAAGGTAGATATGTTATCTACGTGAAGGCTGGTGTCTATGACGAATATATTCTAGTTGACAAGAATAAgaagaatattttattatatggcGATGGCCCTACAAAAACCATTATCACCGGTAGTAAAAATTTTGTCGATGGAGTGAAGACTATGCGGACGGCTACATTCTCTACTGTTGCGGATAATTTCATGGCAAAGGCAATGGCATTTGAGAACACAGCAGGAGCAGCCAAACATCAAGCAGTAGCCCTTCGTGTACAAGGCGACCAATCAGTTTTCTTTGACTGCGCCATACGAGGTTACCAAGACACATTATATGCACACGCCCACCGACAATTCTACAGAAACTGCGAAATTTCAGGCACAGTTGATTTCATTTTCGGCTACTCAGCAACAGTAATACAAAGTTCCAAAATAGTAATCCGAAAACCGGaatcaaatcaacaaaacaTAATAGTAGCTGATGGAACAGAACAAAAGAACATGCCAACAGGAGTAGTACTTCAGAATTGCGAGATCGTGCCAGAAGCGGAATTACAAGCTGATAGATTAACAGTTAAATCATATTTAGCAAGACCATGGAAAGCATATTCAAGAGCAATATTTATGGAAAATACTATAGGTGATTTAATTCAACCAGATGGATATCTTCCTTGGGCAGGAACTCAATTTCTTGATACATGTTACTTTGCTGAGTATGCTAATACTGGACCTGGTTCAGATACTAAAGCAAGAGTTAAATGGGGAAGAGGTGTTCTTACAAAAGCTGATGCACAAAAATATACTGCTAATGAATGGATTCAAGGTGGTATGTGGTTACCTGCTACTGGTGTACCATTTGATCTTGGATTTACTAAAGCTTGA 1698 0.3905 MGSQVLVSAVSLILVVGVAIGVVCVVNRTSDKPGDDGQLNTHTKAVQAVCQGSDDKKFCVDTLSPVNTSDPNDYIKAVVKTSMESVIKAFNMSDTLAVENDKDNATVKMALDDCKDLLQSAIQELAASDVLIHDNNAQNVTTRTAELKNWLGAVVAYQQSCLDGFNTDGEKQVQSQLQTGSLDDVGKLTALALDVVSAVAKVLSAFNLDLDVKSASRRLFEADQDEEGNPEWMSAADRKLMADMSTGMSVTPNVVVAKDGSGQFKTVLDGINSYPKNHQGRYVIYVKAGVYDEYILVDKNKKNILLYGDGPTKTIITGSKNFVDGVKTMRTATFSTVADNFMAKAMAFENTAGAAKHQAVALRVQGDQSVFFDCAIRGYQDTLYAHAHRQFYRNCEISGTVDFIFGYSATVIQSSKIVIRKPESNQQNIIVADGTEQKNMPTGVVLQNCEIVPEAELQADRLTVKSYLARPWKAYSRAIFMENTIGDLIQPDGYLPWAGTQFLDTCYFAEYANTGPGSDTKARVKWGRGVLTKADAQKYTANEWIQGGMWLPATGVPFDLGFTKA 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03677 565 Pfam Plant invertase/pectin methylesterase inhibitor 45 193 IPR006501 GO:0004857
Tsu01g03677 565 SMART PMEI_2 41 195 IPR006501 GO:0004857
Tsu01g03677 565 ProSitePatterns Pectinesterase signature 2. 397 406 IPR033131 -
Tsu01g03677 565 CDD PMEI-like_3 48 201 - -
Tsu01g03677 565 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 44 197 IPR035513 -
Tsu01g03677 565 Pfam Pectinesterase 253 547 IPR000070 GO:0030599|GO:0042545
Tsu01g03677 565 TIGRFAM PME_inhib: pectinesterase inhibitor domain 30 177 IPR006501 GO:0004857
Tsu01g03677 565 PANTHER PECTINESTERASE 7 563 - -
Tsu01g03677 565 SUPERFAMILY Pectin lyase-like 250 560 IPR011050 -
Tsu01g03677 565 Gene3D - 247 562 IPR012334 -
Tsu01g03677 565 Gene3D Invertase/pectin methylesterase inhibitor family protein 41 200 IPR035513 -
Tsu01g03677 565 PANTHER PECTINESTERASE 7 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03677 Tsu-Chr1 44519814 44522002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03677 4 562 Carbohydrate Esterase AT3G62170 39.865 2.03e-144 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03677 K01051 - gmx:100820142 824.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g04333 07 48633628 48641242 Tsu01g03677 01 44519814 44522002 PCT