Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03674 ATGGAAACTGAGAAGGATGTTGGTGGTGTTGGTGTTGATGAGAAAAGGAACAATCATGATAATGAAGCAACAACGTCAGAGAAAAATGGCACAGAAACAAGTACAAACGGTGAAAAGGACAAGACAAAAGAGAAACAAGAGACAGTTCCATTTCACAAATTATTCACTTTTGCAGATTCTACTGACATTTTATTAATGGTTGTTGGAACAATCGGTGCTATTGGAAACGGTTTGGGTTTACCTCTTATGACATTGTTGTTCGGTCAAATGATTGATAGTTTTGGTAGTAATCAAAGTAACACCGATCATGTTGTTCAACAAGTGTCCAAGgTGTCACTGAAATTTGTATATTTGGCAGTAGGATGTGGGGTAGCAGCATTTCTTCAGGTGAGTTGTTGGATGGTCACAGGGGAAAGACAGGCTGCAAGAATAAGAGGATTGTATTTGAAAACAATATTAAGACAAGATGTCACTTTCTTTGATAAAGAAACAAACACTGGAGAAGTTGTTGGGAGAATGTCAGGTGACACTGTTCTAATTCAAGATGCCATGGGTGAGAAGGTTGGGAAATTCTTGCAGCTAATAGCAACATTCATTGGGGGTTTTGTGATAGCATTTACTAAAGGGTGGCTTCTTACTGTTGTAATGATGTCAACTCTTCCACTTCTTGTTGTGTCAGGTGCTGCCATGGCTGTTATCATAGGCAGAATGGCTTCTAAAGGTCAAACTGCTTATGCAAAAGCTGCACATGTTGTTGAACAGACAATTGGCTCAATAAGAACCGTTGCATCATTTACCGGAGAAAAGCAAGCAGTGTCTAGTTATAGTAAATTTCTTGTAGATGCTTACAAAGCAGGAGTTTTTGAAGGTTCTATAGCTGGAGTAGGCCTAGGCACAGTTATGTTTGTTATTTTCTGTGGTTATGCTTTAGCTGTATGGTTTGGTGCAAAGATGATAATGGAAAAAGGATATAATGGCGGCACCGTGATTAATGTGATCATCGCCGTGTTAACTGCTTCCATgtcTCTTGGCCAGGCATCACCTAGTCTGAGTGCTTTCGCGGCAGGTCAGGCGGCAGCTTACAAAATGTTTGAGACAATTAAGAGGAAGCCGGAGATAGATACTTATGATCCAAATGGAAAAATATTAGAAGACATTCAAGGTGAAATAGAGTTGAAGGAAGTTTATTTCAGTTATCCTGCAAGACCTGAGGAGCTTATATTCAATGGGTTCTCTCTTCATATACCGAGCGGAACAACTGCGGCATTAGTTGGACAAAGTGGAAGCGGAAAGTCCACAGTTATTAGTTTGGTAGAAAGATTCTATGATCCACAGGCAGGTGAAGTTCTTATTGATGGCATTAACATGAAAGAATTTCAGCTAAGGTGGATTAGAGGGAAAATTGGTCTTGTTAGCCAGGAGCCGGTGTTGTTTGCATCGAGCATTAAGGATAACATTGCATATGGTAAAGATGGAGCAACAATCGAAGAGATAAGATCTGCGTCCGAACTTGCAAATGCTGCCAAATTCATTGATAAACTTCCACAGGGATTGGACACAATGGTTGGTGAGCATGGAACTCAGCTGTCTGGTGGACAGAAGCAGCGCATTGCCATCGCAAGAGCAATCCTTAAGAATCCAAGAATTTTACTTCTAGATGAAGCTACAAGTGCACTTGATGCAGAATCTGAAAGGGTGGTGCAAGAGGCTCTAGATAGGATCATGGTCAACCGAACCACGGTTGTTGTTGCACATCGCTTGAGCACAGTGAGGAATGCTGACATGATTGCTGTAATCCATAGAGGGAAAATGGTTGAGAAAGGAACTCACTCAGAATTACTCAAGGATCCTGAAGGAGCTTATTCACAACTTGTACGCTTACAAGAAGTAAACAAGGAATCAGAAGAAAATACAGACCACAACAGCAAGAGAGAACTTTCTGCAGAATCCTTTAGACAATCGAGTCAAAGGAAGTCACTTCAAAGATCTATTAGTAAGGGATCATCTATAGGGAATAGTAGTCGCCATTCGTTTTCAGTTTCGTTCGGTTTACCAACGGGAATTAACGTCGCTGGTGATCCGGATGAACTTGAAAATTTACCGACCAAAGAAAAAGGACCAGAAGTTCCACTAAGCCGCCTTGCTACCCTCAACAAGCCAGAGATTCCAGTTCTGATTTTGGGATGTTTAGCTGCCATAGGAAACGGTGTCATATTTCCAATATTCGGTGTTTTGATCTCCAGTGTCATCAAAACATTTTACGAACCGTTTGATGAGATGAAAAAGGACTCCAAGTTTTGGGCAATAATGTTTATGCTCCTTGGTTTTGCATCATTGGTGGTGATTCCAGCGCGATCTTATTTTTTCTCTGTGGCTGGATGTAAGTTAATCCAACGTATCAGGCTATTATGTTTTGAGAAGGTGGTGAGCATGGAGGTTAGTTGGTTTGATGAGCCTGAAAACTCAAGCGGCGCAGTTGGTGCAAGGCTCTCAGCAGATGCTGCTTCTGTTCGCGCCCTTGTTGGTGATGCACTTGGACTGGTGGTTCAGAATTTAGCAACTGCATTGGCTGGTTTGATTATTGCTTTCATTGCAAGCTGGCAGCTCGCGTTGATTATTCTTGTCTTGATTCCTCTCATTGGATTAAATGGATACGTTCAAATGAAATTCATGAAGGGATTCAGCGCAGATGCAAAGATGATGTACGAGGAAGCTAGCCAAGTTGCAAACGATGCTGTTGGAAGCATAAGAACTGTGGCATCTTTCTGTGCCGAAGATAAGGTTATGGAACTATATAGGAAAAAATGTGAAGGTCCGATGAAAACTGGCATAAGGCAAGGAATAATCAGTGGATCGGGATTCGGtgtttcatttttcttattgttttgtGTCTATGCAACAAGTTTCTACGCTGGAGCTAGACTTGTGGAATCCGGGGATACAACATTTTCAAAAGTTTTCCGGgTTTTCTTTGCGTTAACTATGGCGGCTATTGGTATTTCTCAGTCAAGTTCCTTTGCTCCTGACTCAAGTAAAGCAAAGTCAGCCACTGCTTCGATATTTGGAATGATTGATACAAAATCAAAGATCGATCCAACTGACGAATCCGGTACCACTCTAGATAGTGTTAAAGGCGAAATTGAGCTTCGTCATATTAGCTTCAAGTATCCATCTCGGCCTGATATTCAGATTTTCCGAGACCTCAACTTGAACATCCATTCTGGAAAGACAGTAGCACTTGTCGGTGAAAGTGGAAGCGGAAAATCAACTGTGATTGCTTTGTTGCAAAGATTTTATGATCCTGATTCAGGTGAAATCACACTTGATGGAATCGAAATTCGTCAGTTACAGCTCAAGTGGTTAAGGCAACAGATGGGTCTTGTAAGCCAAGAACCGGTATTATTCAATGACACTATCCGCGCCAATATTGCTTATGGTAAAGATGGCAATGCAACTGAGGCCGAAATCATAGCTGCTTCTGAATTGGCCAATGCTCATAGATTCATTAGTAGCTTACAACAGGGTTATGATACAATAGTGGGAGAGAGAGGAACTCAATTATCAGGTGGACAAAAACAAAGGGTAGCCATTGCACGTGCAATAATCAAAAGTCCAAAGATTTTGTTACTTGATGAAGCCACAAGTGCATTAGATGCTGAGTCAGAAAGAGTTGTTCAAGATGCATTAGACAAAGTCATGGTGAATAGAACCACTGTGGTTGTGGCACATCGTTTATCAACAATTAAAAATGCTGATGTTATTGCTGTTGTTAAAAATGGTGTTATAGTTGAAAAAGGAAGACATGAAACACTTATTAATGTTAAAGATGGATTTTATGCTTCCTTAGTTCAACTTCATACAAGTGCTAAAACAGTGtga 3879 0.4063 METEKDVGGVGVDEKRNNHDNEATTSEKNGTETSTNGEKDKTKEKQETVPFHKLFTFADSTDILLMVVGTIGAIGNGLGLPLMTLLFGQMIDSFGSNQSNTDHVVQQVSKVSLKFVYLAVGCGVAAFLQVSCWMVTGERQAARIRGLYLKTILRQDVTFFDKETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLIATFIGGFVIAFTKGWLLTVVMMSTLPLLVVSGAAMAVIIGRMASKGQTAYAKAAHVVEQTIGSIRTVASFTGEKQAVSSYSKFLVDAYKAGVFEGSIAGVGLGTVMFVIFCGYALAVWFGAKMIMEKGYNGGTVINVIIAVLTASMSLGQASPSLSAFAAGQAAAYKMFETIKRKPEIDTYDPNGKILEDIQGEIELKEVYFSYPARPEELIFNGFSLHIPSGTTAALVGQSGSGKSTVISLVERFYDPQAGEVLIDGINMKEFQLRWIRGKIGLVSQEPVLFASSIKDNIAYGKDGATIEEIRSASELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERVVQEALDRIMVNRTTVVVAHRLSTVRNADMIAVIHRGKMVEKGTHSELLKDPEGAYSQLVRLQEVNKESEENTDHNSKRELSAESFRQSSQRKSLQRSISKGSSIGNSSRHSFSVSFGLPTGINVAGDPDELENLPTKEKGPEVPLSRLATLNKPEIPVLILGCLAAIGNGVIFPIFGVLISSVIKTFYEPFDEMKKDSKFWAIMFMLLGFASLVVIPARSYFFSVAGCKLIQRIRLLCFEKVVSMEVSWFDEPENSSGAVGARLSADAASVRALVGDALGLVVQNLATALAGLIIAFIASWQLALIILVLIPLIGLNGYVQMKFMKGFSADAKMMYEEASQVANDAVGSIRTVASFCAEDKVMELYRKKCEGPMKTGIRQGIISGSGFGVSFFLLFCVYATSFYAGARLVESGDTTFSKVFRVFFALTMAAIGISQSSSFAPDSSKAKSATASIFGMIDTKSKIDPTDESGTTLDSVKGEIELRHISFKYPSRPDIQIFRDLNLNIHSGKTVALVGESGSGKSTVIALLQRFYDPDSGEITLDGIEIRQLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKDGNATEAEIIAASELANAHRFISSLQQGYDTIVGERGTQLSGGQKQRVAIARAIIKSPKILLLDEATSALDAESERVVQDALDKVMVNRTTVVVAHRLSTIKNADVIAVVKNGVIVEKGRHETLINVKDGFYASLVQLHTSAKTV 1292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03674 1292 Gene3D - 388 645 IPR027417 -
Tsu01g03674 1292 MobiDBLite consensus disorder prediction 630 675 - -
Tsu01g03674 1292 Pfam ABC transporter transmembrane region 67 341 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu01g03674 1292 Pfam ABC transporter transmembrane region 725 997 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu01g03674 1292 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 67 355 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu01g03674 1292 SUPERFAMILY ABC transporter transmembrane region 52 374 IPR036640 GO:0005524|GO:0016021
Tsu01g03674 1292 CDD ABC_MTABC3_MDL1_MDL2 390 628 - -
Tsu01g03674 1292 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 379 628 IPR027417 -
Tsu01g03674 1292 CDD ABC_6TM_Pgp_ABCB1_D2_like 717 1030 - -
Tsu01g03674 1292 MobiDBLite consensus disorder prediction 652 675 - -
Tsu01g03674 1292 ProSitePatterns ABC transporters family signature. 529 543 IPR017871 GO:0005524
Tsu01g03674 1292 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1037 1285 IPR027417 -
Tsu01g03674 1292 MobiDBLite consensus disorder prediction 1 26 - -
Tsu01g03674 1292 SMART AAA_5 417 603 IPR003593 -
Tsu01g03674 1292 SMART AAA_5 1074 1267 IPR003593 -
Tsu01g03674 1292 SUPERFAMILY ABC transporter transmembrane region 713 1031 IPR036640 GO:0005524|GO:0016021
Tsu01g03674 1292 Pfam ABC transporter 1066 1215 IPR003439 GO:0005524
Tsu01g03674 1292 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1047 1284 IPR003439 GO:0005524
Tsu01g03674 1292 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 390 626 IPR003439 GO:0005524
Tsu01g03674 1292 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 18 1288 - -
Tsu01g03674 1292 PANTHER - 18 1288 - -
Tsu01g03674 1292 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 726 1012 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu01g03674 1292 CDD ABC_MTABC3_MDL1_MDL2 1047 1285 - -
Tsu01g03674 1292 ProSitePatterns ABC transporters family signature. 1187 1201 IPR017871 GO:0005524
Tsu01g03674 1292 Gene3D ABC transporter type 1, transmembrane domain 113 1021 IPR036640 GO:0005524|GO:0016021
Tsu01g03674 1292 MobiDBLite consensus disorder prediction 1 45 - -
Tsu01g03674 1292 Gene3D - 1037 1291 IPR027417 -
Tsu01g03674 1292 MobiDBLite consensus disorder prediction 630 651 - -
Tsu01g03674 1292 Pfam ABC transporter 409 557 IPR003439 GO:0005524
Tsu01g03674 1292 CDD ABC_6TM_Pgp_ABCB1_D1_like 66 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03674 Tsu-Chr1 44493419 44500414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03674 39 1291 Calmodulin-binding Proteins AT2G36910 45.570 0.0 1089
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03674 K05658 - gmx:100777909 2170.97