Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03667 ATGGGCAAAGGTTctgcttcttcttcctcctcttccAATGGTAGAAGAAGGAAACATAATTCCTCCAATGTTTCATCATCCATAACACATCAAAATTCTGAAGAACATCTTTGTCCTGATCTTAACCTTGGATTAAGCATTTCCGCAACTCATCAATATGTTCATTCTTCCAATTCAAGggGACATTGGCAACAAATGCAGCAACAAGCTTATGAAGTGAATGATTGTAATGATTACAATAGTTTCTTTGTGAAGGTTTACATGGAAGGAATTCCAATTGGGAGAAAACTCAATTTATTAGCTCATGGTTGTTATGAAGAGCTAGTAAATACTCTTGAACAAATGTTTGACACTACCATTCTATGGGGAACTGGGATGGATGGAATGCAATCAGAGAGATGTCATGTGCTAACTTATGAAGATGGTGAAGGAGATTTGATTATGGTTGGAGATGTCCCTTGGGAGATGTTCTTATCATCTGTGAAGAGATTGAAGATTACAAGAGTCGATGCCTTTGGATTTTAA 525 0.3467 MGKGSASSSSSSNGRRRKHNSSNVSSSITHQNSEEHLCPDLNLGLSISATHQYVHSSNSRGHWQQMQQQAYEVNDCNDYNSFFVKVYMEGIPIGRKLNLLAHGCYEELVNTLEQMFDTTILWGTGMDGMQSERCHVLTYEDGEGDLIMVGDVPWEMFLSSVKRLKITRVDAFGF 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03667 174 Gene3D - 75 173 - -
Tsu01g03667 174 PANTHER AUXIN-INDUCED PROTEIN 2 173 - -
Tsu01g03667 174 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 173 IPR003311 GO:0005634|GO:0006355
Tsu01g03667 174 MobiDBLite consensus disorder prediction 1 33 - -
Tsu01g03667 174 Pfam AUX/IAA family 68 168 IPR033389 -
Tsu01g03667 174 ProSiteProfiles PB1 domain profile. 81 171 IPR000270 GO:0005515
Tsu01g03667 174 SUPERFAMILY CAD & PB1 domains 77 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03667 Tsu-Chr1 44447840 44448895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03667 85 166 B3 DNA Binding Superfamily AT4G23980 36.585 2.71e-12 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Tsu01g03667 AUX_IAA 7.2e-29 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03667 K14484 - gmx:100781660 243.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03667 01 44447840 44448895 Tsu01g03667 01 44447840 44448895 ECH
Tsu07g04343 07 48703820 48704790 Tsu01g03667 01 44447840 44448895 PCT