Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03661 ATGTTGAAGTCGAAGAATAATTCAAAGAATAAGAAGCCGGATGAGATACATTACCTACGTTATACTTGTAACAAAGAAGGTTTTAAGAAAGGAAGTTTGCTTAATTCGAAAAACAAGCCAAGATCAAACAGTCTGGTtgttattgaatttgaaaaagtgaaAGAGAGACCGGAGGAAAGGATTGGTTGTAAAGCTGGAATATCTCTGAAGTTGGATGAAGCATTGAATGTTTATAAGATATATAGATGGGAAGGGGATCACTATGACGAATCAGATTTCGACTACAATTGGGATCAGATgatgaaaaattgttttgatgGAAGGCCTATTTCAGACTGGACATGGCTTGTCCAGACTCATATGAATCGTATGCACTGGTCTTCAGCTTGGGTCAAGTCACATTTTACAGCTGGTCTGAAGACGACTCAGTTAAGTGAGTCTTTCAATGCTTTTCTTCGTGGATTTTTGCAGCCAGACCATTCACTTGTTCAATTCTTTAGTCATTTCAACATTATGGTTCAGAGGATGAGGGATAATCATGCTGATTTGGACTTCAAGGCTGCTAACActagaacaaaaaataattacccCAACAGTCAATTGATGCGGTCCGTTGTAAAGAAGTACACACCAGCTTCTTTTGCATTTATCCACAGGCAGTATGACCGTTCCTTCAAATACTATTATCAGGAGGACACATCAAAAGGGTCTGAGTTGAATAAGTTTTTCAAAGTGTTCACAATTGAAAAGGTTGATGATCCTGATGAAGTAGATGATcataatgatgatgatgctgaTAATGATAATGGCGGGGCTTCAAATTCTGATGAATTTCAAGAAATTATGTCCCCGAGTTTTGAAGATCTTGATCGACTTGATGAGAGGGTTGTCACAGTTGACATTAGGACCAAAAGTTTTAGTTGCACATGTCGTATGTTTGAGAACAGGGGATTCTTTTGTCGACATATTTTCAAAATCTTGGAGTTCTTGGGTGGTTCTGTGCAATATCATTGTTTGAAGACAATACTTGCACAATATGTTTTGAAGCGTTGGACTAGAGATGTGCGTCTGTCTGTTGATAAGCTGAAATCTTCCATCAGTGTTGGCACTGAAGACACCACCCAAGCACAAGGATATCAACAAATTTGTGCTGTAACAGTTCAGCTTTCTACACGTGTTTGTGCAGATCCAGAGGCTTCTCAAATTTTTCTTGATGGTGTTCTTGAAGCTGGGAACAAGGCAGAGGAGTTACTTTTTTCTAAAGGTTCTAAGAATTTCATAAGGGTTGCAGGCAGAGGTTGA 1302 0.3679 MLKSKNNSKNKKPDEIHYLRYTCNKEGFKKGSLLNSKNKPRSNSLVVIEFEKVKERPEERIGCKAGISLKLDEALNVYKIYRWEGDHYDESDFDYNWDQMMKNCFDGRPISDWTWLVQTHMNRMHWSSAWVKSHFTAGLKTTQLSESFNAFLRGFLQPDHSLVQFFSHFNIMVQRMRDNHADLDFKAANTRTKNNYPNSQLMRSVVKKYTPASFAFIHRQYDRSFKYYYQEDTSKGSELNKFFKVFTIEKVDDPDEVDDHNDDDADNDNGGASNSDEFQEIMSPSFEDLDRLDERVVTVDIRTKSFSCTCRMFENRGFFCRHIFKILEFLGGSVQYHCLKTILAQYVLKRWTRDVRLSVDKLKSSISVGTEDTTQAQGYQQICAVTVQLSTRVCADPEASQIFLDGVLEAGNKAEELLFSKGSKNFIRVAGRG 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03661 433 MobiDBLite consensus disorder prediction 253 277 - -
Tsu01g03661 433 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 87 404 IPR031052 GO:0006355
Tsu01g03661 433 ProSiteProfiles Zinc finger SWIM-type profile. 297 331 IPR007527 GO:0008270
Tsu01g03661 433 PANTHER OS03G0181600 PROTEIN 87 404 - -
Tsu01g03661 433 SMART 26again6 306 333 IPR006564 GO:0008270
Tsu01g03661 433 Pfam SWIM zinc finger 307 323 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03661 Tsu-Chr1 44387008 44390507 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tsu01g03661 SWIM 0.001 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03661 - K17604 mtr:MTR_0337s0060 267.314