Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03654 atggGAAGACACTCATGTTGTTACAAGCAAAAGCTTAGGAAGGGACTATGGTCACCAGAGGAAGATGAAAAACTTCTAAGACATATAACAAAGTATGGACATGGATGTTGGAGTTCAGTACCTAAACAAGCAgGTTTGCAAAGATGTGGTAAGAGTTGTAGACTTAGATGGATCAATTACTTAAGACCTGATTTAAAAAGAGGAACATTTTCACAAGATGAAGAAAATCTCATTGTTGAACTTCATTCAGTATTAGGAAATAGATGGTCTCAAATTGCGGCGCAATTACCAGGGAGAACCGACAATGAAATAAAGAATCTATGGAATTCTTGTTTGAAGAAGAAACTGAGACAAAAAGGTATAGATCCAGTAACTCATAAACCATTGTCTCAAGTTGAGAATAATGGAGAAGAAAATTCAAATGCAAAGAGTCAAGAAAAAGCAGGAGagttattattatcatcaaatgAATTGAATCTTTTGAAATTAGAAAGTTCAAAATCAGATGCAGCTTCTAATTATGAGCAGAGAACATCACCAAAAGAATATGCATTAGAAATGGAAGGTTCTTGCAACAAAGATTTCTTCATTGAAAGGTTCATTAGTACTACTACTAATCATCATCACAATCACAATCAGAATACAAATTCTCAAGATTTGATGGGAAATTTTCCAATTCAGATGAGTTATTCAAACACTGAAAATGATAGTAATAATCATAATTGGTTTAAGTTTAACCAAACTGAAAAAACATTTGATATGAATAATTCTGATGAGTTTCATTTCAATTCAAACACAACAACTATGTTTCTTCCAAATTCTTTTTGCTGTAACAATTCACTTGATATTCCTTCTGACAATGTTTCTACTGAGATGAGAAGTAACAGTAATTTTTCAACTTGGGGAGGATTGATGGAAAATCCTACAGAAGAAGCtaataatagtaattattttcataatccAATATTAATGTTGGCTTCTGAATCATTATGTAATGAGATAAAGCCTTCAATGAATTTAGCAGCAGATAATACTTTTGGAGCTATTTTGCCTAATgcaaaacaagaacaagaagaacaGTTACAAAGttctaatatattttctaaGGATATGCAGAAACTAAGAGAAGCTTTTGGAGATATGTAA 1146 0.2993 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQDEENLIVELHSVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQKGIDPVTHKPLSQVENNGEENSNAKSQEKAGELLLSSNELNLLKLESSKSDAASNYEQRTSPKEYALEMEGSCNKDFFIERFISTTTNHHHNHNQNTNSQDLMGNFPIQMSYSNTENDSNNHNWFKFNQTEKTFDMNNSDEFHFNSNTTTMFLPNSFCCNNSLDIPSDNVSTEMRSNSNFSTWGGLMENPTEEANNSNYFHNPILMLASESLCNEIKPSMNLAADNTFGAILPNAKQEQEEQLQSSNIFSKDMQKLREAFGDM 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03654 381 SMART sant 66 114 IPR001005 -
Tsu01g03654 381 SMART sant 13 63 IPR001005 -
Tsu01g03654 381 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Tsu01g03654 381 PANTHER MYB DOMAIN PROTEIN 55 1 353 - -
Tsu01g03654 381 Gene3D - 68 148 - -
Tsu01g03654 381 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tsu01g03654 381 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Tsu01g03654 381 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tsu01g03654 381 CDD SANT 17 61 IPR001005 -
Tsu01g03654 381 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Tsu01g03654 381 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tsu01g03654 381 PANTHER MYB DOMAIN PROTEIN 55 1 353 - -
Tsu01g03654 381 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Tsu01g03654 381 CDD SANT 69 109 IPR001005 -
Tsu01g03654 381 MobiDBLite consensus disorder prediction 128 146 - -
Tsu01g03654 381 MobiDBLite consensus disorder prediction 122 146 - -
Tsu01g03654 381 Gene3D - 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03654 Tsu-Chr1 44305074 44306650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03654 1 146 MYB Transcription Factor Family AT4G01680 85.135 1.12e-92 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu01g03654 Myb_DNA-binding 1.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03654 K09422 - gmx:100815881 463.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03654 01 44305074 44306650 Tsu01g03621 01 44036536 44038006 ECH
Tsu01g03654 01 44305074 44306650 Tsu07g04369 07 48960800 48962375 ECH
Tsu01g03654 01 44305074 44306650 Tsu01g03654 01 44305074 44306650 ECH
Tsu07g04346 07 48728483 48730359 Tsu01g03654 01 44305074 44306650 PCT