Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03649 ATGGCATCTTCCTTCTCAACTCAGTTGGTTCAGAGTCATAACATACTTCCTCGTTTTCATGCTCTACAGGGGAAGCCACATGTAGTGTGTAGCAGTGTCAAATCACAGCTTGGATGCAGTAAATTGTCATCAAGCCATCATTACGCAGCGAGGCTTTCTGTGTCACAACAATCTAAAGCGAAATCAATCACTTCTCGGAGAATAACATGTTCTAGTAGTGCTACGGAAAATGTTGAAGAGCTGCAAGCCAAagtaacaaacaaggttttctTTGATATAGAAATTGGGAAAAAACCTGCCGGAAGAATTGTTATTGGCCTATTTGGAGATGTTGTTCCCAAAACAGCTGAAAATTTCCGAGCTTTGTGCACTGGAGAGAAAGGATATGGCTACAAAGGATCCTTCTTCCATCGTATAATCCCAAAATTCATGATTCAGGGAGGCGACTTCACTGAAGGAAATGGAACTGGTGGAGTCAGTATCTATGGTGGTAAATTTGAAGACGAGAGTTTTGATTtgaagcatGTTGGTCCCGGAGTTTTGAGCATGGCGAATGCTGGTGCTAATAGCAATGGcagtcaattttttatttgcacTGTACCGACTCCATGGTTAGACAATAAACATGTTGTGTTTGGACATGTCCTTGAGGGACTGGATGTTGTGAAGACGCTTGAATCACAGGAGGTAAGCAGCTACAACAATTATCCCGAGAAACCATGCAAAATTGCTGATTCTGGAGAACTGCCTATAGATGGTTGA 762 0.4003 MASSFSTQLVQSHNILPRFHALQGKPHVVCSSVKSQLGCSKLSSSHHYAARLSVSQQSKAKSITSRRITCSSSATENVEELQAKVTNKVFFDIEIGKKPAGRIVIGLFGDVVPKTAENFRALCTGEKGYGYKGSFFHRIIPKFMIQGGDFTEGNGTGGVSIYGGKFEDESFDLKHVGPGVLSMANAGANSNGSQFFICTVPTPWLDNKHVVFGHVLEGLDVVKTLESQEVSSYNNYPEKPCKIADSGELPIDG 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03649 253 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 91 246 IPR002130 GO:0000413|GO:0003755
Tsu01g03649 253 CDD cyclophilin_ABH_like 88 247 - -
Tsu01g03649 253 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 37 252 - -
Tsu01g03649 253 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 131 148 IPR020892 GO:0003755|GO:0006457
Tsu01g03649 253 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 90 248 IPR002130 GO:0000413|GO:0003755
Tsu01g03649 253 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP20-3, CHLOROPLASTIC 37 252 - -
Tsu01g03649 253 SUPERFAMILY Cyclophilin-like 81 249 IPR029000 -
Tsu01g03649 253 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 107 122 IPR002130 GO:0000413|GO:0003755
Tsu01g03649 253 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 136 148 IPR002130 GO:0000413|GO:0003755
Tsu01g03649 253 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 179 194 IPR002130 GO:0000413|GO:0003755
Tsu01g03649 253 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 194 206 IPR002130 GO:0000413|GO:0003755
Tsu01g03649 253 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 207 222 IPR002130 GO:0000413|GO:0003755
Tsu01g03649 253 Gene3D - 62 251 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03649 Tsu-Chr1 44273966 44276343 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03649 39 246 U-box Gene Family AT5G67530 36.161 3.16e-28 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03649 K03768 - gmx:100526955 365.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03649 01 44273966 44276343 Tsu01g03649 01 44273966 44276343 ECH