Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03634 ATGGCTTCTTCTTCCATTACCGCTTCACTCGGAACAACTAAACCCTCTTCTCTCCTCAAAACTCCATCTTCCTTTTCACTTTACAACACTTTCCGTCTCAATACCCTTCTCCGTCTCCGACCTAACCACAAAACTCCCACCGTATCTTTCGTTATTTCTGCTATTGCCACACCCAACACTCCTATCCTCACCGCTCAAGAAGCTTTTAAGGGTTTTGGTTTCGATGACGCTAATGACCAAATTAGCCATGTTCCTGTTACTGTTAGCAAGGACGAACTCGACATTTCCAAGCTTGGTTTTCCTTCCCAACTCGTTGATTCACTCCAGAGACGTGGAATTACCAGTCTTTTCCCCATTCAGAGAGCTGTGTTGCTGCCTGCTATAGAAGGTAGAGATATCATTGCTCGTGCAAAGACTGGGACTGGAAAGACATTAGCATTTGGAATTCCAATTATCAAGGGTCTCATTGAGAATGAACAAAGCAATACGAGGCGGTTTGGTCGGCTTCCTAAAGTATTAGTCCTTGCACCTACTAGGGAGTTAGCAAAGCAAGTAGAGAAGGAGATAAAAGAATCTGCACCTTATCTAAACACGGTTTGTGTTTATGGTGGTGTTTCTTATGATATTCAAAGGAATGCGCTTTCACGCGGTGTTGATGTAGTGGTTGGAACACCAGGGAGACTAATTGACCTGATAAATGGGGGAAGCCTAAAACTTACTGAAATTCAGTATTTGGTACTTGATGAAGCCGATCAGATGCTTGCTGTTGGGTTTGAGCAGGATGTGGAATCAATTTTAGAAACAATCCCCTCTCAGAGGCAGATAATGCTTTTCTCTGCAACCATGCCGGGTTGGGTCAAGAAGTTGTCAAGAAAACATTTGAGCAATCCAAAGACTATTGATTTGGTCGGTGACAGAGAAGAAAAGCTTGCTGAAGGGATCAAACTTTATGCTGTACCAGCCACTTCAATATCAAAGCGGAGAATTCTTTCTGGTCTTATAAGTGCCTATGGAAAGGGTGGGAAGACTATTGTTTTCACACGGACAAAAAGGGATGCTGATGAAATATCATATTCATTGACAAATAGTATAGCTTCTAAAGCACTGCATGGTGATATCTCCCAGTATCAGAGAGAGAGAACATTGGATGGTTTTCGGCAAGGGAGATTCACAGTGCTTGTTGCTACTGATGTTGCTTCTCGTGGACTAGATATTCCCAATGTTGATTTGATTATACATTATGAACTTCCCGATGGTCCCGAGACTTTTGTACATCGCTCTGGTCGTACTGGACGTGCAGGAAAAGAGGGTGCTGCTATTGTAATGTACACCACTAGCCAGAAAAGAACTGTTATATCCCTTGAGCGTGAGGTAGGCTCCAGATTTGAATTTATTAATGCACCGCCTATGGAAGATTTACCGGAATCACCCACCAGGCAAGTTGTTTCTACACTTGATAGAGATAGAAGTAATCAGAGAGGTTATGGGGATCGGAGAGGTTACAGAACCGGTGGAGATGACTGGTCAACTGAAGGTAGACGGTCAGGTGGTGATGCCTGGTCGGGTGGAGGTAGGCGGTCAGGTGGGGATGACTGGTCAACTGGAGGTAGACGGTCAAACGGATATTCGTCATCAAACAGATCTTCATCACCAAACAGGTATTCGTCATCAAACAGATCTTCATCATCAAACGGTTATTCGTCATCAAAcagatcatcatcatcaaacggTTATTCGTCATCAAACAGAGGTAGTTATGGAGGGAGTTGTTTTAATTGTGGACAATCAGGGCATCGGGCATCGGAATGTCCCTCTAAATTTTAG 1824 0.4315 MASSSITASLGTTKPSSLLKTPSSFSLYNTFRLNTLLRLRPNHKTPTVSFVISAIATPNTPILTAQEAFKGFGFDDANDQISHVPVTVSKDELDISKLGFPSQLVDSLQRRGITSLFPIQRAVLLPAIEGRDIIARAKTGTGKTLAFGIPIIKGLIENEQSNTRRFGRLPKVLVLAPTRELAKQVEKEIKESAPYLNTVCVYGGVSYDIQRNALSRGVDVVVGTPGRLIDLINGGSLKLTEIQYLVLDEADQMLAVGFEQDVESILETIPSQRQIMLFSATMPGWVKKLSRKHLSNPKTIDLVGDREEKLAEGIKLYAVPATSISKRRILSGLISAYGKGGKTIVFTRTKRDADEISYSLTNSIASKALHGDISQYQRERTLDGFRQGRFTVLVATDVASRGLDIPNVDLIIHYELPDGPETFVHRSGRTGRAGKEGAAIVMYTTSQKRTVISLEREVGSRFEFINAPPMEDLPESPTRQVVSTLDRDRSNQRGYGDRRGYRTGGDDWSTEGRRSGGDAWSGGGRRSGGDDWSTGGRRSNGYSSSNRSSSPNRYSSSNRSSSSNGYSSSNRSSSSNGYSSSNRGSYGGSCFNCGQSGHRASECPSKF 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03634 607 SUPERFAMILY Retrovirus zinc finger-like domains 572 606 IPR036875 GO:0003676|GO:0008270
Tsu01g03634 607 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 329 481 IPR001650 -
Tsu01g03634 607 ProSiteProfiles Zinc finger CCHC-type profile. 590 605 IPR001878 GO:0003676|GO:0008270
Tsu01g03634 607 CDD SF2_C_DEAD 314 443 - -
Tsu01g03634 607 Pfam Zinc knuckle 589 605 IPR001878 GO:0003676|GO:0008270
Tsu01g03634 607 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 124 300 IPR014001 -
Tsu01g03634 607 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 455 IPR027417 -
Tsu01g03634 607 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 3, CHLOROPLASTIC ISOFORM X1 38 487 - -
Tsu01g03634 607 SMART helicmild6 354 434 IPR001650 -
Tsu01g03634 607 CDD DEADc 104 301 - -
Tsu01g03634 607 SMART c2hcfinal6 589 605 IPR001878 GO:0003676|GO:0008270
Tsu01g03634 607 Gene3D - 94 304 IPR027417 -
Tsu01g03634 607 MobiDBLite consensus disorder prediction 533 584 - -
Tsu01g03634 607 Gene3D - 581 606 - -
Tsu01g03634 607 SMART ultradead3 112 317 IPR014001 -
Tsu01g03634 607 Pfam DEAD/DEAH box helicase 117 289 IPR011545 GO:0003676|GO:0005524
Tsu01g03634 607 Gene3D - 321 495 IPR027417 -
Tsu01g03634 607 MobiDBLite consensus disorder prediction 490 513 - -
Tsu01g03634 607 MobiDBLite consensus disorder prediction 467 584 - -
Tsu01g03634 607 Pfam Helicase conserved C-terminal domain 327 434 IPR001650 -
Tsu01g03634 607 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 38 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03634 Tsu-Chr1 44172050 44177233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03634 119 474 Eukaryotic Initiation Factors Gene Family AT1G72730 36.240 1.11e-60 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03634 - K16911 lja:Lj0g3v0055059.1 653.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03634 01 44172050 44177233 Tsu07g04359 07 48858053 48863768 ECH
Tsu01g03634 01 44172050 44177233 Tsu01g03634 01 44172050 44177233 ECH
Tsu07g04359 07 48858053 48863768 Tsu01g03634 01 44172050 44177233 PCT