Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03631 ATGTCGGCCTCAAGGCCTAGCCAATCATCCAATAATTCAGGGAGATCAAGAAATAGTGCTAGGATTATTGCTCAGACAACTGTGGATGCTAAACTTCATGCAACTTTTGAGGAGTCTGGGAGTTCCTTTGACTATTCCAGTTCGGTGCGAGTTTCTGGTTCAGTTGATGGAGATCAGCAACCGAGGTCCAACAAAGTAACAACAGCTTACCTGAATCACATACAGAGAGGTAAGCAGATTCAGCCTTTTGGGTGCTTGCTAGCTTTAGACGAGAAAACGTGCAAGGTCATTGCATACAGTGAGAATGCACCTGAAATGCTGACCATGGTAAGTCATGCTGTTCCTAGTGTCGGTGACCACCCTGCCCTTGGCATTGGAACTGACATAAGGACTATCTTCACTGCACCGAGTGCTTCTGCCTTACAAAAGGCACTAGGATTTGCGGAGGTTTCACTTCTTAACCCTATCCTAGTTCATTGCAAGACTTCTGGGaagccgttttatgctatcatCCATCGTGTTACCGGTAGTTTGATCATTGACTTTGAACCGGTGAAGCCTTATGAAGTTCCCATGACTGCAGCGGGTGCCTTGCAATCTTACAAACTTGCTGCTAAAGCAATTACAAGATTGCAATCTTTGCCTAGTGGCAGCATGGAAAGGCTTTGCGATACAATGGTTCAAGAAGTTTTTGAACTAACAGGTTATGACAGGGTGATGGCTTATAAATTTCACGAGGACGATCACGGGGAGGTGATCTCTGAAATAGCAAAGCCAGGCCTAGAGCCATACCTAGGTTTGCACTATCCGGCCACAGATATTCCCCAGGCTGCACGCTTTTTATTTATGAAGAACAAAGTCCGTATGATAGTTGATTGTCATGCAAAACATGTGAAGGTTCTTCAAGACGAAAAACTTCCGTTCGATTTAACTTTGTGTGGTTCAACCTTAAGGGCTCCCCATAGTTGTCATCTGCAGTACATGGCTAACATGGATTCAATTGCTTCATTGGTTATGGCAGTAGTAGTAAATGACAGTGATGAAGATGGAGACAGCGCTGATGTAGTTCTCCCACAGAAGAAAAAGAGACTTTGGGGTTTGGTAGTTTGTCATAACACTACTCCAAGGTTTGTTCCCTTTCCTCTAAGGTATGCTTGTGAATTCCTGGCTCAAGTATTTGCCATTCATGTGAACAAAGAAATAGAGTTAGAATGTCAGATTCTTGAGAAGAATATCCTGCGCACGCAGACGCTGTTGTGTGATATGCTGATGCGAGACGCACCCTTAGGTATTGTATCACAAAGTCCTAACATAATGGACCTAGTGAAATGTGATGGGGCTGCCCTATTGTATAAAAACAAGTTATGGATATTAGGAGCGACTCCGAGCGAACCTCAGATAAGAGAAATAGCTTTATGGATGTACGAGTACCACACGGATTCCACGGGTTTGAGTACAGATAGCTTGTCTGATGCAGGGTTTCCAGGGGCTCTTAAACTTAGTGATACTATATGTGGAATGGCAGCTGTTAGAATAACTTCAAAAGACATAGTTTTCTGGTTTAGGTCGCCCACTTCTGCAGAAATCCGATGGGGTGGCGCAAAGCATGAACCTGGCGAACAAGATGATGGTAGGAAGATGCATCCAAGATCATCATTCAAGGCTTTCCTTGAAGTTGTGAAGGCTAGGAGCATACCGTGGAAAGACTTTGAAATGGACGCTATTCATTCGTTGCAGTTAATCCTGAGAAATTCATCCAAAGATACAGCGATTATTGATTTGAACTCAAAGGCAATCAATACAAGACTTAATGATTTGAAGATTGAAGGGATGCAGGAATTGGAAGCAGTGACAAGTGAGATGGTTAGGTTGATTGAAACAGCAACAGTGCCTATTTTGGCAGTGGATGTTGAAGGGATGGTCAATGGTTGGAATATCAAAATTGCTGATTTGACAGGTCTTCCGGTTGGCGAAGCTATTGGAAAGCATTTACTCACACTTGTTGAGGATTCTTCAACTGAGATAGTCAAGAAGATGCTTAATCTGGCACTGCAGGgcgaagaagagaagaatgttCAATTCGAGATCAAAACGCACGGGTCTATGACGGATTCCGGTCCTATTAGTTTGATAGTTAATGCGTGTGCAAGCAGAGATCTTCATGAAAATGTAGTTGGAGTTTGTTTTGTGGCCCAAGATATAACTGCTCAGAAGACTGTCATGGACAAATTCACCCGAATCGAAGGCGATTACAAGGCAATTGTACAGAACCCTAATCAATTAATACCTCCTATTTTTGGTACAGATGAATTTGGCTGGTGTTGTGAGTGGAATGCAGCTATGATAAAGTTAACCGGATGGAAGCGAGAGGAGGTTATGGATAAAATGCTTCTAGGAGAGGTTTTTGGAACTCAGATGTCTTGTTGTCGTCTAAAGAATCAAGAAGCTTTTGTTAATTTCGGCATTGTACTTAATAAAGCCATGACTGGTTTGGAAACAGAAAAGGTTCCTTTCGGTTTTTTCTCTCGGAAGGGAAAGTATGTAGAGTGCCTACTTTCTGTGAGTAAGAAAATAGATGCCGAGGGAATAGTTACCGGGGTCTTCTGTTTCTTGCAGCTAGCTAGCCCAGAGCTACAACAAGCATTACATATTCAGCGCCTATCTGAACAAACGGCTCTCAAAAGACTGAAAGTATTAACTTATATGAAACGGCAGGTCAGGAATCCTTTGGCTGGGATTGTTTTCTCCAGTAAAATGTTGGAGAATACTGACTTGGGAACCGAACAAAAACGAATTGTGAACACCAGTTCTCAGTGCCAGCGCCAGCTTAGCAAAATTCTCGATGACTCCGATCTAGACAACATCATTGATGGGTACTTGGATCTTGAGATGGCTGAATTCACTTTGCATGAGGTACTGGTTACCTCTCTTAGTCAAGTCATGAATAGGAGTAACACAAGGGGTATCCGAATAGTAAATGATGTTAAGGAGCATATTGCGATGGAAACCTTGTACGGTGATAGTCTTAGACTTCAGCAGGTCTTGGCCGACTTCTTACTAATTTCCATCAACTCCACACCAAATGGAGGTCAGGTTGTTATAGCAGCCTCCTTAACTAAAGAACAGTTGGGGAAATCTGTCCATCTTGTTAACTTGGAGCTCAGCATAACACATGGTGGTAACGGGGTGGCGGAAGCAGTGCTGAACCAGATGTTTGGAAATAATGGGCTAGAATCAGAAGAGGGTATTAGCCTACACATCAGTAGAAAGTTGTTAAAGCTTATGAATGGAGATGTTCGTTATTTAAAAGAAGCGGGAAAATCGTCATTTATTCTATCTGTTGAACTTGCAGCAGCTCATAAGCTGAAAGCAGCAGCACCACACTGCGAATCATCACTGTCTTCTTCGCAATCACCACTGACCACCATGGATATCAAAACCTTTTCATTCTCCGCCGCCACGCCACCGTTAGCTGTAATCGCCGCTGCAAAACTCGCCGGATTTTCTCCATCTATCGATACCTCACTCCCTTCCGACTCCACTCCCACATTTCTCTTCTCCAACGGGTCAAAATTGCGTGGAGCATTTGTTCTTCTACGCTATATTGGAAGAACTTCGCCTCTTCCCAATTTCTATGGCCAAAATGCTTTTGAAACTAGCCAGATTGATGAGTTGTTAGAGTATGCACCTGTACTCTCATCAGGCCCTGCTTTTGAGAATGGATGCAAGTATATAGATGAGTACTTGGAGAAGCGGACTTTTTTAGTTGGTTATTCATTATCAATTGCAGATGTAGCTATCTGGGCAGGTCTTGCAGGAGCTGGAAAAAGATGGGAAAGCTTGAGGAAGTCAAAGAAATACCAAAATCTTGCACGATGGTACAATTCAATAGTGACAGAATATGGTACTGCCTTAAATGAAGTCTCAGCAACATATATTGGCAAAAAAGGAGGACCGGGAGAGCCATCTGCAACCAAGTCAAAAGATCAGACAGTCGTCACGGATAAAGCGAAGAATGTGAACGGGCATGTATCTGAGAACACTAAGGGAGGAGGCAAACCTTTAGCAGAGATAGATCTTCCAGATGCTGAAATTGGAAAAGTTCGCTTGCGATTTGCACCTGAGCCCAGTGGCTATCTTCACATTGGTCACTCAAAAGCAGCTCTGTTGAACAAGTATTTTGCTGAGCGATACCAAGGTCAGGTTATTATTCGTTTTGATGATACCAATCCTGCTAAAGAAAGTAATGAGTTTGTGGACAACTTGGTGAAAGATATTGATACATTGGGTATCAAATATGAAACAATTACATATACATCAGATTACTTCCCTGAGTTGATGGAATTGGCTGAAAAATTAATTAGCCAGGGTAAAGCATATGTTGATGACACTCCACGCGAAGAAATGCAAAAGGAGAGAATGGATGGCATAGAGTCTAAATGCAGAAATCAGAGTGTAgaggaaaatttgaaattatggAAGGAAATGATTGCAGGATCAGAGAGGGGCTTGCAGTGTTGTGTCCGTGGGAAATTGGATATGCAAGACCCAAACAAATCACTCCGTGATCCTGTTTACTATCGCTGCAATCCAATGCCTCATCATAGAATTGGATCCAAGTATAAAGTGTATCCAACTTATGATTTTGCATGTCCATATGTTGATTCTAAGGAAGGTATCACACATGCCCTTCGGTCAAGTGAATACCATGATCGGAATGCTCAGTATTATCGAATTCAAGAGGACATGGGAGTTAGGAAAGTTCTCATCTACGAATTTAGCCGGTTGAATATGGTCTACACTCTTCTCAGCAAACGAAAGCTTCTGTGGTTTGTTCAAAATGGACAAGTTGAATCATGGGACGATCCACGGTTTCCTACAGTACAAGGAATTGTGCGTAGAGGTCTAAAAATTGAAGCActaattcaatttattattgAACAAGGGGCATCAAAAAATCTCAATCTCATGGAGTGGGACAAGCTATGGACTATCAATAAGAAGATTATTGACCCCGTATGTCCCAGACACACTGCTGTCATTGCGGATAAACGGGTATTGCTGACCCTCACTGATGGTCCTGAGAAATCATTTGTCCGCATCATACCTAGGCACAAGAAATATGAAGCTGCTGGAAATAAAGCTACCACATATACTAGAAGGATATGGATTGACTATGCTGATGCAGAGTCCATATCAGCAGGTGAGGAAGTAACCTTGATGGATTGGGGAAATGCCATAGTAAAGGAAGTAGAGAAGGACCAAGATGGGAATGTCACAGGGTTGAGTGGTGTTTTGCATCTTGAAGGATCGGTGAAGACCACAAAATTGAAGCTCACTTGGCTACCTGAGTTAGATGAACTAGTTAGCTTGACATTGATGGAGTTTGACTATCTAATTACGAAGAAAAAGCTTGAGGAAGGGGAGGAATTCACTGATGTGCTCAATCCCTGTACAAAAAAGGAGACTCTAGCATATGGAGATGCCAATATGCGAAATCTTCAGCGTGGAGAGGTATTACAGCTGGAGCGAAAGGGATATTTCAGGTGCGATGTACCCTTTGTTCGGCCTTCCAAACCAATCGTCTTATTTGCAATCCCAGATGGCAGGCAGCAAACATCTTTGAAGTAG 5631 0.4219 MSASRPSQSSNNSGRSRNSARIIAQTTVDAKLHATFEESGSSFDYSSSVRVSGSVDGDQQPRSNKVTTAYLNHIQRGKQIQPFGCLLALDEKTCKVIAYSENAPEMLTMVSHAVPSVGDHPALGIGTDIRTIFTAPSASALQKALGFAEVSLLNPILVHCKTSGKPFYAIIHRVTGSLIIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVISEIAKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCHAKHVKVLQDEKLPFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNDSDEDGDSADVVLPQKKKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEIELECQILEKNILRTQTLLCDMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKNKLWILGATPSEPQIREIALWMYEYHTDSTGLSTDSLSDAGFPGALKLSDTICGMAAVRITSKDIVFWFRSPTSAEIRWGGAKHEPGEQDDGRKMHPRSSFKAFLEVVKARSIPWKDFEMDAIHSLQLILRNSSKDTAIIDLNSKAINTRLNDLKIEGMQELEAVTSEMVRLIETATVPILAVDVEGMVNGWNIKIADLTGLPVGEAIGKHLLTLVEDSSTEIVKKMLNLALQGEEEKNVQFEIKTHGSMTDSGPISLIVNACASRDLHENVVGVCFVAQDITAQKTVMDKFTRIEGDYKAIVQNPNQLIPPIFGTDEFGWCCEWNAAMIKLTGWKREEVMDKMLLGEVFGTQMSCCRLKNQEAFVNFGIVLNKAMTGLETEKVPFGFFSRKGKYVECLLSVSKKIDAEGIVTGVFCFLQLASPELQQALHIQRLSEQTALKRLKVLTYMKRQVRNPLAGIVFSSKMLENTDLGTEQKRIVNTSSQCQRQLSKILDDSDLDNIIDGYLDLEMAEFTLHEVLVTSLSQVMNRSNTRGIRIVNDVKEHIAMETLYGDSLRLQQVLADFLLISINSTPNGGQVVIAASLTKEQLGKSVHLVNLELSITHGGNGVAEAVLNQMFGNNGLESEEGISLHISRKLLKLMNGDVRYLKEAGKSSFILSVELAAAHKLKAAAPHCESSLSSSQSPLTTMDIKTFSFSAATPPLAVIAAAKLAGFSPSIDTSLPSDSTPTFLFSNGSKLRGAFVLLRYIGRTSPLPNFYGQNAFETSQIDELLEYAPVLSSGPAFENGCKYIDEYLEKRTFLVGYSLSIADVAIWAGLAGAGKRWESLRKSKKYQNLARWYNSIVTEYGTALNEVSATYIGKKGGPGEPSATKSKDQTVVTDKAKNVNGHVSENTKGGGKPLAEIDLPDAEIGKVRLRFAPEPSGYLHIGHSKAALLNKYFAERYQGQVIIRFDDTNPAKESNEFVDNLVKDIDTLGIKYETITYTSDYFPELMELAEKLISQGKAYVDDTPREEMQKERMDGIESKCRNQSVEENLKLWKEMIAGSERGLQCCVRGKLDMQDPNKSLRDPVYYRCNPMPHHRIGSKYKVYPTYDFACPYVDSKEGITHALRSSEYHDRNAQYYRIQEDMGVRKVLIYEFSRLNMVYTLLSKRKLLWFVQNGQVESWDDPRFPTVQGIVRRGLKIEALIQFIIEQGASKNLNLMEWDKLWTINKKIIDPVCPRHTAVIADKRVLLTLTDGPEKSFVRIIPRHKKYEAAGNKATTYTRRIWIDYADAESISAGEEVTLMDWGNAIVKEVEKDQDGNVTGLSGVLHLEGSVKTTKLKLTWLPELDELVSLTLMEFDYLITKKKLEEGEEFTDVLNPCTKKETLAYGDANMRNLQRGEVLQLERKGYFRCDVPFVRPSKPIVLFAIPDGRQQTSLK 1876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03631 1876 ProSiteProfiles PAS repeat profile. 750 802 IPR000014 -
Tsu01g03631 1876 SMART pas_2 619 685 IPR000014 -
Tsu01g03631 1876 SMART pas_2 749 818 IPR000014 -
Tsu01g03631 1876 Hamap Glutamate--tRNA ligase [gltX]. 1208 1865 IPR004526 GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424
Tsu01g03631 1876 SUPERFAMILY PYP-like sensor domain (PAS domain) 764 870 IPR035965 -
Tsu01g03631 1876 CDD HisKA 907 949 IPR003661 GO:0000155|GO:0007165
Tsu01g03631 1876 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1006 1116 IPR003594 -
Tsu01g03631 1876 Gene3D - 199 562 IPR029016 -
Tsu01g03631 1876 Gene3D - 957 1121 IPR036890 -
Tsu01g03631 1876 ProSiteProfiles PAS repeat profile. 617 687 IPR000014 -
Tsu01g03631 1876 CDD PAS 761 872 IPR000014 -
Tsu01g03631 1876 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 218 391 IPR016132 -
Tsu01g03631 1876 Gene3D - 406 579 IPR043150 -
Tsu01g03631 1876 Pfam tRNA synthetases class I (E and Q), catalytic domain 1367 1671 IPR020058 GO:0004812|GO:0005524|GO:0043039
Tsu01g03631 1876 MobiDBLite consensus disorder prediction 1 21 - -
Tsu01g03631 1876 SMART HKATPase_4 1006 1118 IPR003594 -
Tsu01g03631 1876 Pfam Phytochrome region 414 586 IPR013515 GO:0006355|GO:0009584
Tsu01g03631 1876 TIGRFAM gltX_arch: glutamate--tRNA ligase 1346 1851 IPR004526 GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424
Tsu01g03631 1876 CDD PAS 628 734 IPR000014 -
Tsu01g03631 1876 SUPERFAMILY Nucleotidylyl transferase 1367 1680 - -
Tsu01g03631 1876 SUPERFAMILY GAF domain-like 198 398 - -
Tsu01g03631 1876 TIGRFAM sensory_box: PAS domain S-box protein 624 740 IPR000014 -
Tsu01g03631 1876 SUPERFAMILY PYP-like sensor domain (PAS domain) 623 730 IPR035965 -
Tsu01g03631 1876 Pfam GAF domain 218 401 IPR003018 GO:0005515
Tsu01g03631 1876 SMART HisKA_10 894 955 IPR003661 GO:0000155|GO:0007165
Tsu01g03631 1876 PRINTS Phytochrome signature 133 155 IPR001294 GO:0006355|GO:0009584
Tsu01g03631 1876 PRINTS Phytochrome signature 233 252 IPR001294 GO:0006355|GO:0009584
Tsu01g03631 1876 PRINTS Phytochrome signature 431 451 IPR001294 GO:0006355|GO:0009584
Tsu01g03631 1876 PRINTS Phytochrome signature 712 729 IPR001294 GO:0006355|GO:0009584
Tsu01g03631 1876 PRINTS Phytochrome signature 318 339 IPR001294 GO:0006355|GO:0009584
Tsu01g03631 1876 PRINTS Phytochrome signature 620 636 IPR001294 GO:0006355|GO:0009584
Tsu01g03631 1876 PRINTS Phytochrome signature 732 752 IPR001294 GO:0006355|GO:0009584
Tsu01g03631 1876 PRINTS Phytochrome signature 516 535 IPR001294 GO:0006355|GO:0009584
Tsu01g03631 1876 PRINTS Phytochrome signature 549 567 IPR001294 GO:0006355|GO:0009584
Tsu01g03631 1876 PRINTS Phytochrome signature 639 654 IPR001294 GO:0006355|GO:0009584
Tsu01g03631 1876 SUPERFAMILY PYP-like sensor domain (PAS domain) 74 186 IPR035965 -
Tsu01g03631 1876 Gene3D Ribosomal Protein L25; Chain P 1784 1863 IPR020056 -
Tsu01g03631 1876 Gene3D HUPs 1337 1677 IPR014729 -
Tsu01g03631 1876 PANTHER PHYTOCHROME A 1 1119 - -
Tsu01g03631 1876 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 1374 1385 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Tsu01g03631 1876 ProSiteProfiles Histidine kinase domain profile. 901 1120 IPR005467 -
Tsu01g03631 1876 Pfam PAS fold 620 734 IPR013767 GO:0006355
Tsu01g03631 1876 Pfam PAS fold 750 872 IPR013767 GO:0006355
Tsu01g03631 1876 Pfam tRNA synthetases class I (E and Q), anti-codon binding domain 1674 1851 IPR020059 GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0006418
Tsu01g03631 1876 SUPERFAMILY GAF domain-like 409 585 - -
Tsu01g03631 1876 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 955 1110 IPR036890 -
Tsu01g03631 1876 SMART gaf_1 218 411 IPR003018 GO:0005515
Tsu01g03631 1876 SUPERFAMILY GST C-terminal domain-like 1199 1298 IPR036282 -
Tsu01g03631 1876 Gene3D - 1144 1312 - -
Tsu01g03631 1876 Gene3D PAS domain 763 875 - -
Tsu01g03631 1876 SUPERFAMILY Ribosomal protein L25-like 1674 1871 IPR011035 GO:0006412
Tsu01g03631 1876 Gene3D PAS domain 73 321 - -
Tsu01g03631 1876 Pfam PAS fold 69 185 IPR013654 GO:0006355
Tsu01g03631 1876 Gene3D PAS domain 611 748 - -
Tsu01g03631 1876 CDD GST_C_AaRS_like 1218 1297 - -
Tsu01g03631 1876 ProSitePatterns Phytochrome chromophore attachment site signature. 318 327 IPR013516 -
Tsu01g03631 1876 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 1119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03631 Tsu-Chr1 44140550 44150800 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03631 1 1121 Histidine Kinase Gene Family AT1G09570 78.966 0.0 1860
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03631 K12120 - gmx:100790763 1909.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03631 01 44140550 44150800 Tsu01g03631 01 44140550 44150800 ECH