Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03619 atgccTCTTTATGAGTTATACCGTTTGGCTAGAGAGAACCTTGGTAATGAGACTAATAGCACAAGTGTAGCTGATCGACCTTCCTCGCCtgagaatgatttttttgagcTGGTTTGGGAGAGTGGTCAGATTTCAAGCCAAGGTCAATCAAGTAGAGGTAGAAAGAGTCCATCTTGTAGGAGTTTACCATCTCACTGTTTACCATCTCATAGTCCTAAAGGTCGAGATAAAGATgtaggaggaggaggaggaggatatGGTACTAATAACAATCAGAAGACAGGAAAATTTTGTGATTTAGATTCTGGATTGAATGAGATTCCAATGTCGGTGCCATCTCGCGAAGTAGATGAAATGATGCCTTGGTTGGATTATACAATGGATGGTTCTTTTCAAACCGAATATGGTTCTGATTTCTTACATGAACTTACGGAGAATGATGACCTTCCTGCCTCGAATAATTTTACTCTATTGGAGAAAAGGAGTAACGGTAATCAGATGTTTAGGGACTCTCATAAAAATTCTGCAGAACCGATGAATGTTTCTAAGGATTCTTCAGCTGATCAGGTTGAGACTGCAAGACATAAAGGTAGTACAAGTCAGTTATATCCGCCATCATCGAATCAGTGTCAAACATCATTTCTAACTGGTAGATCCGGGGCATCGAATATAACTGAGAATAACAATGCAAATAATGGTAACCAGGGTGTGCCTTACGGTGAAATTGATCGTATTCCATCTTCCTCGAGCGGTTTTTCTAGCTTAAAAGTGCAGAAGCAAGATCCTATATTGCCTGGCAATGTTTCCAATGTAATGAATTTTTCCCATTTCGCAAGGCCTGCTGCTATTGCGAGAGCTAATCTTCAGAACATCGGCATGAAGTCTGGATTGAATTCAGCTTCAACAAGACCAGATAGTATGGGAATTAAGAATAGAGGCGAAGATTCAACTAGCAGCAATCCTACTGAGTCAACTCTTGTTAATTCAAGCGGTGAATGTTCAAAGGAACCAGAAATGTGTTGTCAGAAGGTAGTGGAGCAATCTAAGGCTGATTTGAAACCATTGCAGCCAAAATCTCTTGAACTGAACACTTTAGCTTCTAAACAATCGGAGCCTGGTTGCAAAGAGAATGGAATTAAGAATGATCAACGTTCCAATCAAGTTCTTGGTGACGGTGGCGCTAAAGGACAAACCGGTGCTGAAAAAGGTATGGAGGCGGCCGTAGCCTCTTCTTCTATTTGCTCTGGTAATGGTACAGACAGAGGCTCGGATGATCCGAATCGAGATTTGAAACGGAAAAGTAGAGACACCGAGGACTCTGAATGTCATAGTGAAGATGTTGAGGATGAATCAGTAGGTGTTAAAAAGGGAGGTTCCGGACGAGGAGTTGCAGGTTCCAAAAGAAGTCGCGCTGCCGAAGTGCATAATCTATCCGAAAGGAGGCGAAGAGACAGGATAAATGAGAAGATGCGTGCATTACAAGAACTCATACCTAATTGCAATaagGTAGATAAAGCTTCTATGCTGGATGAGGCAATTGAGTATCTAAAAACACTTCAGCTCCAAGTTCAAATGATGTCAATGGGAGCTGGTTTATATATGCCTCAAATGATGTTACCTGGTGGAATGCAGCACATGCATGCACCACACATGGCTGCTTTTTCACCTATGGGCATTGGCATGCATATGGGATTAGGTATGGGTTATGGAATGGGAATGCCTGACATGAACGGAGGATCTTCTAGATTTCCAATGATGCAGATGCCTCCTCAGATGCAAGGAACTCATATTCCTGTTGCACATATGTCCGGACCTTCTGCTATACATGGGATGGCCAGATCAAATCCTCAAGGGTTTGGACTTCCAGGTCAGGGAGTTTCCATGCCAATGCCGCGTGGTCATGGATTTCCTTTTTCAGGAGGGCCTGTTATGAACTCTGCGTATGGATCCACAGGAACTGTTGAAACTGTGAATCCAGCTTCAGCATCTGGCTCAAAAGATCCAATGCAAAATGTGGACTCACAAATTAAGCAAAACACTGGTGGCCGTGACTCTACAAGCCAGATTCCCAATCAGTCGGCTTTGGTGCGTAATGGTGGTCATGCGTCAGTGGCTGATGAAAGTGGAGCTGCTAATCCCAGCAATATCACTTTGTGA 2157 0.4205 MPLYELYRLARENLGNETNSTSVADRPSSPENDFFELVWESGQISSQGQSSRGRKSPSCRSLPSHCLPSHSPKGRDKDVGGGGGGYGTNNNQKTGKFCDLDSGLNEIPMSVPSREVDEMMPWLDYTMDGSFQTEYGSDFLHELTENDDLPASNNFTLLEKRSNGNQMFRDSHKNSAEPMNVSKDSSADQVETARHKGSTSQLYPPSSNQCQTSFLTGRSGASNITENNNANNGNQGVPYGEIDRIPSSSSGFSSLKVQKQDPILPGNVSNVMNFSHFARPAAIARANLQNIGMKSGLNSASTRPDSMGIKNRGEDSTSSNPTESTLVNSSGECSKEPEMCCQKVVEQSKADLKPLQPKSLELNTLASKQSEPGCKENGIKNDQRSNQVLGDGGAKGQTGAEKGMEAAVASSSICSGNGTDRGSDDPNRDLKRKSRDTEDSECHSEDVEDESVGVKKGGSGRGVAGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMMSMGAGLYMPQMMLPGGMQHMHAPHMAAFSPMGIGMHMGLGMGYGMGMPDMNGGSSRFPMMQMPPQMQGTHIPVAHMSGPSAIHGMARSNPQGFGLPGQGVSMPMPRGHGFPFSGGPVMNSAYGSTGTVETVNPASASGSKDPMQNVDSQIKQNTGGRDSTSQIPNQSALVRNGGHASVADESGAANPSNITL 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03619 718 MobiDBLite consensus disorder prediction 44 65 - -
Tsu01g03619 718 MobiDBLite consensus disorder prediction 44 97 - -
Tsu01g03619 718 MobiDBLite consensus disorder prediction 422 455 - -
Tsu01g03619 718 MobiDBLite consensus disorder prediction 162 236 - -
Tsu01g03619 718 MobiDBLite consensus disorder prediction 360 479 - -
Tsu01g03619 718 MobiDBLite consensus disorder prediction 294 332 - -
Tsu01g03619 718 MobiDBLite consensus disorder prediction 162 256 - -
Tsu01g03619 718 MobiDBLite consensus disorder prediction 654 698 - -
Tsu01g03619 718 MobiDBLite consensus disorder prediction 360 392 - -
Tsu01g03619 718 PANTHER TRANSCRIPTION FACTOR PIF3 1 689 - -
Tsu01g03619 718 CDD bHLH_AtPIF_like 470 532 - -
Tsu01g03619 718 MobiDBLite consensus disorder prediction 654 718 - -
Tsu01g03619 718 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 467 533 IPR036638 GO:0046983
Tsu01g03619 718 Gene3D - 465 528 IPR036638 GO:0046983
Tsu01g03619 718 PANTHER TRANSCRIPTION FACTOR PIF3 1 689 IPR044273 GO:0003700|GO:0006355
Tsu01g03619 718 MobiDBLite consensus disorder prediction 294 334 - -
Tsu01g03619 718 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 470 519 IPR011598 GO:0046983
Tsu01g03619 718 SMART finulus 476 525 IPR011598 GO:0046983
Tsu01g03619 718 Pfam Helix-loop-helix DNA-binding domain 474 520 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03619 Tsu-Chr1 43992503 43996933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03619 1 581 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 35.880 2.25e-72 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu01g03619 HLH 7.8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03619 K12126 - gmx:100794974 925.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03619 01 43992503 43996933 Tsu01g03619 01 43992503 43996933 ECH