Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03618 ATGACTAGGAAGAAGGTGAAACTTGCCTTTATCGCCGATGATTCAGCGAGGAAGGCAACCtataagaaaagaaagaaaggcaTCATCAAGAAGGTGAGTGAACTCACCATTCTTTGTGGCATTCCAGCATGTGCTATAATTTCAAATCCTTTTGATTCTAAAACAGAGGTGTGGCCAGATCTAGCAGGAGCCAAGCAGATTATTGAGAGGTATCAGAATTCATCTGTGATAGACGGCGCGAAAAATGTGAACCAAGAGAGCTTCCTCTTACAAAGGATAACTAAAGCTAGGGAGCATCTTAAGAAGCAAAAGCAAGATAATCGCGAGAAGGAGATGACCATTCGTATGATTGAGTACATGAAAAACAAGCAGCTGCCTGATGATCTATCTGTTCCAGATTTGAAAGAATTTGATAAGTTaattgagaaaaatctgaaagAGATTGAGAACAAAATTGTTGAGGCTAAATTGATTTGA 477 0.3669 MTRKKVKLAFIADDSARKATYKKRKKGIIKKVSELTILCGIPACAIISNPFDSKTEVWPDLAGAKQIIERYQNSSVIDGAKNVNQESFLLQRITKAREHLKKQKQDNREKEMTIRMIEYMKNKQLPDDLSVPDLKEFDKLIEKNLKEIENKIVEAKLI 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03618 158 Coils Coil 90 113 - -
Tsu01g03618 158 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tsu01g03618 158 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tsu01g03618 158 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tsu01g03618 158 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Tsu01g03618 158 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 155 - -
Tsu01g03618 158 PANTHER MADS BOX PROTEIN 2 155 - -
Tsu01g03618 158 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Tsu01g03618 158 Gene3D - 13 125 IPR036879 GO:0003677|GO:0046983
Tsu01g03618 158 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03618 Tsu-Chr1 43974200 43974676 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03618 1 152 Type I MADS-box Gene Family AT5G48670 47.712 3.66e-37 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu01g03618 SRF-TF 2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03618 - - gmx:100792290 202.601