Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03592 ATGCCAATAAGAAAGTATTACTGCGAATACTGCGAAAAACAATTTCAAGACACTCCGTCGGATCGGAAACGCCACTCTGCCGGCATTCAACACCAGCAAGCCAAAGCTCGTTGGTACGATTCCTTCAAaccccaacaacaacaacaacacaacaacaaccCTAATCAACCCTTCTGCCTCCACTTCGTCAACACGGGATTTTGTCGTTATGCCGATTCTTGCAAATATTTTCATCCCAATTCCAACAATATACAGCAGCAGCAACCAATAATAAACAACACCACACCAGGAGGGGATGTAGTTGTAGAAAGTATGGGAGTGTCGTTGGGCAATTTACCTCCTTCGCTCCAGCCTCCGCCTGAGGGTGGATACCCCCAATTTCCCTTTGTTGACTGGGGATAG 402 0.4303 MPIRKYYCEYCEKQFQDTPSDRKRHSAGIQHQQAKARWYDSFKPQQQQQHNNNPNQPFCLHFVNTGFCRYADSCKYFHPNSNNIQQQQPIINNTTPGGDVVVESMGVSLGNLPPSLQPPPEGGYPQFPFVDWG 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03592 133 Pfam U1 zinc finger 4 39 IPR013085 GO:0008270
Tsu01g03592 133 SUPERFAMILY beta-beta-alpha zinc fingers 4 57 IPR036236 -
Tsu01g03592 133 ProSiteProfiles Zinc finger C3H1-type profile. 53 81 IPR000571 GO:0046872
Tsu01g03592 133 SUPERFAMILY CCCH zinc finger 55 81 IPR036855 GO:0046872
Tsu01g03592 133 Gene3D Classic Zinc Finger 3 56 - -
Tsu01g03592 133 PANTHER NUCLEASE-RELATED 1 133 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu01g03592 zf-U1 1.4e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03592 K13152 - gmx:100527203 182.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03592 01 43809954 43810568 Tsu01g03592 01 43809954 43810568 ECH