Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03574 ATGGAAGGCTCAATGGTTCCATCACTGTCAGATACCAAACTCACCAATCTTGTTCTTTCCAACGGGAAACACTACTCTTCTCCTGATGATGACTTAGAGACCTTCTATGTCAAACTCACTGACTTATTGGACTCCTTTGGGCTCACTCTCATTTTCAATGCTAGAGAAACATCCTTAGACTTGTACCTGTTTTACTTGGAAGTCACCAGAAGAGGAGGTTATCACCAGGTTGGTCAACAAAAGAAATGGGGTGAAGTTGTTTCAGCACTAAAACTTGAAGGCAACAATCTAAAGTTATGTGCTCAAGTCGAAAAGCTCTATGCACTTCTGTTATACAAATTCGAGAAATTGTACTTCTATCGGTTTCCTTCAACTCAAACTGCAACTAGCAGCACCAAAGGTACAGTTAAAAAGGAGGAGAACTCGACCACTAGTTTATCTCAATTAATGGATGATGGAGATTATCTGACTGCGGCAAGGCTGTCCAAGGACTACCCTATAAAAAAACTGACAGTAGTTCTACAAACACCCTCAAAAGACAAAGAAACGAAGAAACGACGGCGAGGTGCTCCAACGGGGAGAAGTGGATATCAAATATTTCTCAAGCAAGAATGTGCTCGACTAAAAGCTTGTTGCCAGGACATAGATGGCAAAACAATCCTACGCACGGCTGTCGAAGCATGGAACAAGATGTCCGACAATGATAAACAGCCATATGTGGAAGAAAGCAAGAAGATAAAGGAACAAAATAAGCAAGCAAATATGATTGACAATAAGCAGAAGGAACAAAATAAGGAAGCAATGATCATTgacactaagaagaagaagaaaaaaaagagcatTCGAGATCTTAACATGGATGAAAAGAGGCCTAATGTGTCTGGTGACTACTGTGTAACTTCGCAACCACTGCCAAATCACTCTTTTGTCAACAATGCAGCAGTGGACTTGGCTCTTAAAATGACAGAAAAAACATCCAAGGATCCCTTCTTCTCGGTTGATTTGGATACTTATCGTTCTGTAGATTTGCAATATGGGGAATTTATGTAA 1050 0.3933 MEGSMVPSLSDTKLTNLVLSNGKHYSSPDDDLETFYVKLTDLLDSFGLTLIFNARETSLDLYLFYLEVTRRGGYHQVGQQKKWGEVVSALKLEGNNLKLCAQVEKLYALLLYKFEKLYFYRFPSTQTATSSTKGTVKKEENSTTSLSQLMDDGDYLTAARLSKDYPIKKLTVVLQTPSKDKETKKRRRGAPTGRSGYQIFLKQECARLKACCQDIDGKTILRTAVEAWNKMSDNDKQPYVEESKKIKEQNKQANMIDNKQKEQNKEAMIIDTKKKKKKKSIRDLNMDEKRPNVSGDYCVTSQPLPNHSFVNNAAVDLALKMTEKTSKDPFFSVDLDTYRSVDLQYGEFM 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03574 349 Coils Coil 246 266 - -
Tsu01g03574 349 Pfam ARID/BRIGHT DNA binding domain 33 115 IPR001606 GO:0003677
Tsu01g03574 349 SMART ARID_2 26 115 - -
Tsu01g03574 349 CDD HMGB-UBF_HMG-box 194 249 - -
Tsu01g03574 349 Pfam HMG (high mobility group) box 194 253 IPR009071 -
Tsu01g03574 349 PANTHER HMG (HIGH MOBILITY GROUP) BOX PROTEIN 9 336 - -
Tsu01g03574 349 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 9 336 - -
Tsu01g03574 349 SMART hmgende2 190 259 IPR009071 -
Tsu01g03574 349 SUPERFAMILY HMG-box 175 252 IPR036910 -
Tsu01g03574 349 Gene3D High mobility group box domain 173 256 IPR036910 -
Tsu01g03574 349 Gene3D - 21 140 IPR036431 GO:0003677
Tsu01g03574 349 ProSiteProfiles ARID domain profile. 22 119 IPR001606 GO:0003677
Tsu01g03574 349 SMART bright_3 30 120 IPR001606 GO:0003677
Tsu01g03574 349 SUPERFAMILY ARID-like 31 120 IPR036431 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03574 35 239 ARID Transcription Factor Family AT3G13350 23.967 3.30e-11 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Tsu01g03574 ARID 1.6e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03574 - - mtr:MTR_5g080030 315.849