Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03570 ATGTTGAAATCCACAAAGGGTTCATCTGCTCGGAGTGATGGATCAGTGGGTGTGGAGAATGGATCAAGAGGAAATGCTATTTCTTTTGATCATGCGAGAAATACCTCAGCTAAGTATGATTTCTCAAGAAATAGTGACGTGCTGAGTCGTGTGAGTAGTAGTTTTGCTTCTGAAGATGTTCCTGATGCTGCATCTGAGAAAGACCTGGGTAATGAGTTTTTCAAACAGAAGAAGTTTAAGGAAGCTATTGATTGTTATTCAAGGAGCATTGCCTTCTCACCAACTGCTGTAGCCTATGCAAATAGGGCAATGGCCCGTATAAAGCTAAGAAGATTTCAAGAGGCTGAGGATGACTGTACAGAGGCCTTAAATCTCGACGATCGTTACATAAAAGCATACTCACGGCGAGCAACAGCTAGAAAAGAACTTGGGAAAAATAAAGAATCCATGGAGGATGCCGAATTTGCCATGAGGTTGGAACCTAACAATCAAGAAGTCAAGAAACAGTATGCTGATGCCAAGTCACTCTACGAGAAAGAAATTGTACATAAAGCATCTACAGCACTAAGAAACACTGTAGAAAAAGTGGGAAAGTCCAAGACAAAAGTTAATGGGAGCAGCAGCATCCACTCTGTTTCGCACGGTAATCAAAAGTCAGGGCCAACTGAAGCTCATCATCAAACAAAGGGTAATGAGCAACAAATTCCTGCTAAAGAATCACTTTTATTGGAGGAGATCAATAATAAGGATACAAAATCTGGAAGCAGGACCCAAGGACAAGTAGGCAATGGTTCTAAGGAAGGTTATAATGCAAACAAAAGCTTGGAACAGagaaataaaaaaactagaaagcCGGAAATGAAAGCATCTGTTGAACAACTTGCATCTCGAGCTGCTTCTCGCGCCATGGCTGAAGCTGCAAAAAACATAACACCACCTACTACAGCTTATCAGTTTGAGGTCTCTTGGAGAGGGTTTTCAGGTGATCGTGCTTTGCAGGCTTCTCTGTTAAAGGCAATGTCTCCCCACGAATTaccaaaaatattcaaaaatgcCTTATCTTCTACCCTGCTAATTGAGATAATCAAGTGTGTTGCATCCTTTTTCACTGAAGACATGGACCTAGTTGTCAGTTATATGGATAATTTAACTAAGGTTCCGAGATTTGATGTGATCGTAATGTGCCTTCCATCAGCAGCTAAGGAAGATTTACGCAAGATCTGGAATGAAGTGTTCTGTAGTGAAGCAACTCCAATGGAGTTTGCAGAGATTCTGGACAACCTCCGATCGAAATTCTACCTTGGATAG 1308 0.4044 MLKSTKGSSARSDGSVGVENGSRGNAISFDHARNTSAKYDFSRNSDVLSRVSSSFASEDVPDAASEKDLGNEFFKQKKFKEAIDCYSRSIAFSPTAVAYANRAMARIKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKNKESMEDAEFAMRLEPNNQEVKKQYADAKSLYEKEIVHKASTALRNTVEKVGKSKTKVNGSSSIHSVSHGNQKSGPTEAHHQTKGNEQQIPAKESLLLEEINNKDTKSGSRTQGQVGNGSKEGYNANKSLEQRNKKTRKPEMKASVEQLASRAASRAMAEAAKNITPPTTAYQFEVSWRGFSGDRALQASLLKAMSPHELPKIFKNALSSTLLIEIIKCVASFFTEDMDLVVSYMDNLTKVPRFDVIVMCLPSAAKEDLRKIWNEVFCSEATPMEFAEILDNLRSKFYLG 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03570 435 MobiDBLite consensus disorder prediction 196 235 - -
Tsu01g03570 435 Pfam Potential Monad-binding region of RPAP3 312 401 IPR025986 -
Tsu01g03570 435 Pfam Tetratricopeptide repeat 98 126 IPR019734 GO:0005515
Tsu01g03570 435 MobiDBLite consensus disorder prediction 196 289 - -
Tsu01g03570 435 MobiDBLite consensus disorder prediction 252 272 - -
Tsu01g03570 435 SMART tpr_5 97 129 IPR019734 GO:0005515
Tsu01g03570 435 SMART tpr_5 130 163 IPR019734 GO:0005515
Tsu01g03570 435 SMART tpr_5 63 96 IPR019734 GO:0005515
Tsu01g03570 435 ProSiteProfiles TPR repeat profile. 63 96 IPR019734 GO:0005515
Tsu01g03570 435 MobiDBLite consensus disorder prediction 273 289 - -
Tsu01g03570 435 SUPERFAMILY TPR-like 62 177 IPR011990 GO:0005515
Tsu01g03570 435 Gene3D Tetratricopeptide repeat domain 51 161 IPR011990 GO:0005515
Tsu01g03570 435 PANTHER OS05G0129900 PROTEIN 28 434 - -
Tsu01g03570 435 MobiDBLite consensus disorder prediction 1 29 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03570 67 133 U-box Gene Family AT3G07370 39.706 5.97e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03570 K23002 - gmx:100784528 614.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03570 01 43626403 43633692 Tsu01g03570 01 43626403 43633692 ECH