Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03568 ATGGATCTAATTGGGTCAGATATATCGGATCGAATTCTCAAGAACCAGATCGCCACTCATCCCCTCTATCCAAATCTACTATCTGCTTTTATAGAATGCCAAAAgGTTGGGGTACCATCAGAAGTAGCATCCCTTCTGGAAGAAATAGGGCGTGAAAGCCACCACCACAATGCTCTCCGTGAGATCGGAGATGATCCTGACCTTGACCACTTCATGgaatcATACTGCGAAATTCTTCATAGATACAAAGAGGAATTGTCCAAGCCATTCAATGAAGCAACATTGTTTTTGTGTAATATTGAATCACAATTAAGCCAACTCTGCAATgacacacaacaacaacaagcaATGTCATCTGATTATAACAACCGTTCAGATGAGGCGGTAGGGACATCAGAGGATGAATTGAGTTGTGGAAGGGTTGAGGGAGTAGAAGTTCATCATGAAATTTGTGGCACATCATGTCAAGGTGATAAAGAGCTTAAAGAAATGCTCCTTCGTAAATATGGAGGTTATCTTAGCAACTTGAGAAAAGAATTtctaaagaaaaggaaaaagggTAAACTACCTAAGGATGCAAGAAAAGCATTGATGGATTGGTGGAATATTCACTATAGGTGGCCTTATCCCACGGAGGAGGAGAAATTGCAACTATCAGAAAATACTGGACTTGATATAAAGCAGATAAATAATTGGTTCATAAATCAAAGGAAAAGACATTGGAAACCATCTGAAGATATGAGATTCGCGATTATGGAGGGTGTAAGTAGCACCGGCATGGCAGGACCTCTGTAA 795 0.3786 MDLIGSDISDRILKNQIATHPLYPNLLSAFIECQKVGVPSEVASLLEEIGRESHHHNALREIGDDPDLDHFMESYCEILHRYKEELSKPFNEATLFLCNIESQLSQLCNDTQQQQAMSSDYNNRSDEAVGTSEDELSCGRVEGVEVHHEICGTSCQGDKELKEMLLRKYGGYLSNLRKEFLKKRKKGKLPKDARKALMDWWNIHYRWPYPTEEEKLQLSENTGLDIKQINNWFINQRKRHWKPSEDMRFAIMEGVSSTGMAGPL 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03568 264 ProSiteProfiles 'Homeobox' domain profile. 180 243 IPR001356 GO:0003677
Tsu01g03568 264 Pfam ELK domain 160 181 IPR005539 GO:0003677
Tsu01g03568 264 SMART ELK_2 160 181 IPR005539 GO:0003677
Tsu01g03568 264 SMART HOX_1 182 247 IPR001356 GO:0003677
Tsu01g03568 264 Pfam KNOX1 domain 13 54 IPR005540 GO:0003677|GO:0005634
Tsu01g03568 264 SMART KNOX1_2 11 55 IPR005540 GO:0003677|GO:0005634
Tsu01g03568 264 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 11 254 - -
Tsu01g03568 264 Pfam KNOX2 domain 62 108 IPR005541 GO:0003677|GO:0005634
Tsu01g03568 264 CDD homeodomain 192 244 IPR001356 GO:0003677
Tsu01g03568 264 ProSitePatterns 'Homeobox' domain signature. 218 241 IPR017970 GO:0000981|GO:0006355
Tsu01g03568 264 Gene3D - 178 252 - -
Tsu01g03568 264 SMART KNOX2_2 58 109 IPR005541 GO:0003677|GO:0005634
Tsu01g03568 264 Pfam Homeobox KN domain 200 239 IPR008422 GO:0003677|GO:0006355
Tsu01g03568 264 SUPERFAMILY Homeodomain-like 182 252 IPR009057 -
Tsu01g03568 264 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 10 11 254 - -
Tsu01g03568 264 ProSiteProfiles ELK domain profile. 160 180 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03568 Tsu-Chr1 43599541 43605047 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03568 7 258 Homeobox Transcription Factor Family AT1G23380 51.538 1.29e-82 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Tsu01g03568 KNOX2 6.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03568 - - cam:101509394 380.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03568 01 43599541 43605047 Tsu01g03568 01 43599541 43605047 ECH