Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03566 ATGGTTTGCAAGGAAGATCTATTGATCGAAGAAGTCTGCAAGCTTTATGATCAAATCTCAAGCCTAGACACACTCAAACCCTGCAAAAATGTCAACACACTTTTCACAAAACTTGTTCTCACATGCATGCCACCTAGTCCAATTGATGTCACCAAACTAACCACAAAAGTTCAAGAAATTAGGTCCAAACTCATAAGGCTATGTGGTGAAGCTGAAGGCCATTTAGAAAGCCACTACTCAACAATCATAGCTTCATACAATAATCCACTCAATAATCTCAACATGTTCCCCTATTATTCAAACTACCTCAAACTTAGTATCCTTGAATTCAACATCCTAACCAAACACTCCACTAATGTCCCTAAAAAAATTGCCTTTATTGGCTCAGGTCCACTTCCCCTTACTTCAATTGTCTTAGCCACAAACCACCTTAAAAACACAATCTTTCACAACTATGACATTGACCCTTTAGCCAACTCCAAAGCTTCTTGCTTAATTTCCTCTGATCCTGAATTATCAAAGCGTATGATTTTTCACACCAATGATATAATGGATGTGTCAAATGCTTTGAAAGAATACGAAGTTGTTTATTTGGCAGCACTTGTAGGAATGAATGTCGAGGAAAAGAATAGAATCATCGACCATTTGGCTAAGTACATGGCACCAGGAGCACTCCTCATGCTGAGGAGTGCTCATGGTGCTCGCGCTTTTCTATATCCGGTCGTTGATACTAATGATCTCCGAGGTTTTGAGGTTCTCTCAGTGTTTCATCCTACGGACGAGGTTATCAATTCGGTTGTCATAGCTCGCAAGTATCCAATGGTTTTATTACCAAATAAGTGTTGTTCTGATGAGGTTCAAGCCTTCAAACCCCTGAGCAACCATGGGAATAACATGATTGAGGAATTGGTCGTCGAAGAGAATTAA 927 0.397 MVCKEDLLIEEVCKLYDQISSLDTLKPCKNVNTLFTKLVLTCMPPSPIDVTKLTTKVQEIRSKLIRLCGEAEGHLESHYSTIIASYNNPLNNLNMFPYYSNYLKLSILEFNILTKHSTNVPKKIAFIGSGPLPLTSIVLATNHLKNTIFHNYDIDPLANSKASCLISSDPELSKRMIFHTNDIMDVSNALKEYEVVYLAALVGMNVEEKNRIIDHLAKYMAPGALLMLRSAHGARAFLYPVVDTNDLRGFEVLSVFHPTDEVINSVVIARKYPMVLLPNKCCSDEVQAFKPLSNHGNNMIEELVVEEN 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03566 308 PANTHER SYNTHASE, PUTATIVE-RELATED 1 307 - -
Tsu01g03566 308 Pfam Nicotianamine synthase protein 5 273 IPR004298 GO:0030410|GO:0030418
Tsu01g03566 308 Gene3D Vaccinia Virus protein VP39 7 273 IPR029063 -
Tsu01g03566 308 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 276 IPR004298 GO:0030410|GO:0030418
Tsu01g03566 308 PANTHER NICOTIANAMINE SYNTHASE 3 1 307 IPR004298 GO:0030410|GO:0030418
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03566 Tsu-Chr1 43585864 43586986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03566 1 307 Nicotianamine Synthase Gene Family AT1G09240 59.810 3.08e-133 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03566 K05953 - gmx:100803630 467.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03566 01 43585864 43586986 Tsu01g03566 01 43585864 43586986 ECH