Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03555 atgaaGAAAACACATTCCAAAGGAAGTTTCCTCAGCTTCTTTGATTGGAATGACAAATCTCAAAAGAAGCGATTTTGTGATAATCCTAAGTTACCTGATGTTTTAAACCAAGCAAAGGAAAACATGAAAATCATGCCAATGTCACAGATAAAGATAGATGAGAATGGAGAAAATACTGCTAATATTGCAAGTAGTGATTTTAACTTTGCCTTATCAATTAGTAGTGATGTTGAAGAATGTGGGACTAATAAATCCATAGGGCTAGTAGCCAGACTCATGGGTTTGGATTCACTTCCTGATGTTCCAACTGTCTCTCATGAATCTTCTCAGTTTCTTGAGATTGCTCTTCATTCAGTACCTGACTATTGCAATGTAGATTCCACAGACACAGCAATTAAGTCAAACAAGTCTTTTTCGGGTGCCATTGAATCATCGACAATGAATAGATTTCAAAATGAAACTTTGCATTCTAGGTCTGCTAAACCTATTTCAGTTACTTGCGATAAAATTTTGTCGCCTATCAAAAGTCATGGTTATATGCAATCTAAGAATGCATCATATAAAAAGGGGGAAGATGCTAAGATCATTGAGGCAAGTCGGCGACCATATATGAGGAACAGAATGTCTTCAGTTGGTTCTTTATCTGTTCCTTTGAGAACTCTTGATCCACAAGAGAAGTTGAAAGCGGCGCCACGCGGATCAAAGTTGAATGTGAACGGAAAACCTACTGTTAGGAGCAGCAACTTATATAAGTCTAGTCCAACCGTCATAGGTTTCGATTCCGAAAATAATAATCTGCGTCGAGGTAAAGGAAAATCTGGTTCAATTGTAACACTGTCCAAAACCAATGTTCAAATTAGGGATACGTTGAATTTGAATGGAAATGGGAGATACATGAAGCAGAAAAATTGTCATGGCGAAAACAGCAATGTTCTTAGGCAGAATGGTGTGACCAGCAAAGGTAAATTAACTTCAAAAGTGGACACTAATAAGCCAATACAAACCCGTTCTTCAGATAGTTCTGCTGGAGCTAGGAAGACAACAAATAAATGTGCTGTTAATTCCAACATTGAATCCAAGAGGTCAAGCACAAGAGTAATTGATAAGCAAAAGGAGTTTTCAGTATCCAAAAGAAAGAGTTCTTCCCAAAAGAAGACGTATGATCAGAATGATGCACGATGTTCTGATAAAGCAGTTAATACTTATGAAAGCAAGTCCATAAAATGTAATGTTACAATTGACGAAAGTCTTTACCAGGATGAATTTAGCATGAAAGAAAGTATGGATGTCATTTCATTTACATTTAAATCTCCATTGAGGAAAAAAATGTCCGAGTCGCGATCCACTATTGAGCAAGCGATGAAAACAAGGACCAGAATTGATGTCGATTCTTTTGATCATAGTGAGAAGGTTTATCCCGAAAAATTATCATTATCTCCTACCAAGTTAAATGAAATAGATGTTGATGAATTAAGTGTCATGTTATCTCACATTAACCCACCTCAATGTACCTTGGAAATAGAAAGGTGTTCTATTATCTCACAACCAACCGAAGATCCGAGGTGTAGCAGCAATAACGAAAGCGGAAATGATTCATGTTATCAGCATACAAGAACTCTTACTACttttgaaaatcatttcatCAGTAAAACTTACTTGGATTGTGAAGACAGCACACATGgaGGCAACACAGTTTATTCTTCCATGCAAGATGAAAAAGTACTTAGTTCTCAAATAAATGAATCTATATCACCTAACTACAAGAAGAATTGGTCTGAGAAAAGCTCTAAAAGGATGAGGGAACTTGAATATGTAAAGGATATACTTAGCAATGCAGAATTGATGGAAGAAGAATTAATGGTAGGTGAGACAGACAATATAATAATGTCAACTCTCTTTGACCTTTTggagaataaaaaaattggtgtaGAAAGCTATGAAGACTACTCTAAGCTTGAAAGGAAAGCTATATTTGACTGTGTAAGAGAGTTCTTAGAATTAAGATGTAAGCAAGTTTCTGTTGCAAGGTGCAAATCATGGCCTAGATGGGTGGAATCAGTTACTATGAGGAAGAGGTGGTTAGCAGAAGAAGTGTATAAGGATATGTTAGAGATTAGAAGCATGGAAGAAGAGGTAGTTGTGGATGAGATTGTTAGCAAGGACATGAACACTTCATTGGGTAGATGGCTTGATTTTGATATTGAAGTTTCTGAAAATGGCTTAGAACTTGAGCTTGATATTGTAACCTATTTGATAGATGAATTGGTTTATGATTTGTGGCTTGTTTAA 2289 0.3569 MKKTHSKGSFLSFFDWNDKSQKKRFCDNPKLPDVLNQAKENMKIMPMSQIKIDENGENTANIASSDFNFALSISSDVEECGTNKSIGLVARLMGLDSLPDVPTVSHESSQFLEIALHSVPDYCNVDSTDTAIKSNKSFSGAIESSTMNRFQNETLHSRSAKPISVTCDKILSPIKSHGYMQSKNASYKKGEDAKIIEASRRPYMRNRMSSVGSLSVPLRTLDPQEKLKAAPRGSKLNVNGKPTVRSSNLYKSSPTVIGFDSENNNLRRGKGKSGSIVTLSKTNVQIRDTLNLNGNGRYMKQKNCHGENSNVLRQNGVTSKGKLTSKVDTNKPIQTRSSDSSAGARKTTNKCAVNSNIESKRSSTRVIDKQKEFSVSKRKSSSQKKTYDQNDARCSDKAVNTYESKSIKCNVTIDESLYQDEFSMKESMDVISFTFKSPLRKKMSESRSTIEQAMKTRTRIDVDSFDHSEKVYPEKLSLSPTKLNEIDVDELSVMLSHINPPQCTLEIERCSIISQPTEDPRCSSNNESGNDSCYQHTRTLTTFENHFISKTYLDCEDSTHGGNTVYSSMQDEKVLSSQINESISPNYKKNWSEKSSKRMRELEYVKDILSNAELMEEELMVGETDNIIMSTLFDLLENKKIGVESYEDYSKLERKAIFDCVREFLELRCKQVSVARCKSWPRWVESVTMRKRWLAEEVYKDMLEIRSMEEEVVVDEIVSKDMNTSLGRWLDFDIEVSENGLELELDIVTYLIDELVYDLWLV 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03555 762 PANTHER DUF4378 DOMAIN PROTEIN 298 511 - -
Tsu01g03555 762 PANTHER DUF4378 DOMAIN PROTEIN 598 762 - -
Tsu01g03555 762 PANTHER DUF4378 DOMAIN PROTEIN 514 598 - -
Tsu01g03555 762 Pfam Domain of unknown function (DUF4378) 601 754 IPR025486 -
Tsu01g03555 762 MobiDBLite consensus disorder prediction 300 361 - -
Tsu01g03555 762 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 298 511 - -
Tsu01g03555 762 MobiDBLite consensus disorder prediction 362 390 - -
Tsu01g03555 762 Pfam DUF761-associated sequence motif 87 100 IPR032795 -
Tsu01g03555 762 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 1 312 - -
Tsu01g03555 762 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 598 762 - -
Tsu01g03555 762 PANTHER PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P DOWN SYNDROME CRITICAL REGION PROTEIN 5 -RELATED 514 598 - -
Tsu01g03555 762 MobiDBLite consensus disorder prediction 300 390 - -
Tsu01g03555 762 PANTHER DUF4378 DOMAIN PROTEIN 1 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03555 Tsu-Chr1 43493817 43497149 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03555 1 759 TRM (TON1 Recruiting Motif) Superfamily AT3G58650 29.723 7.68e-61 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03555 - - mtr:MTR_1g083850 818.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03555 01 43493817 43497149 Tsu01g03555 01 43493817 43497149 ECH