Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03554 ATGGAAACGGGAAGCAGTAGCAGGAGAAAGAACAAGCAGCAACACGATTTAGAGTTAGAAAAAGTTCGCTTAATCAGTTTAGCTCTTGAATTCGGCTACGATGAACACTCCGCAATCCAATGTTTCGATCGTCTCGTCGATCTCTACGGTGATGATGGTCGTGATTTTATCACCGTTGAGCATTGCGGCGATGATTTCCTTCTTGCTTTGGCGGAATCAGTACAAGACACAGAGGAATGGGATGATTTACGCGAAATGGAATCACAAGCTGTTGGAACTTTGAATCACGTGCTTGATGAAGGTCTTGCCACGTGCGGTGATGCTTCTAGAAGCTTCGTTGATATTGTTGACGATTCGCCTCAGAAATGTCAGACCAAATTTGTGGAGTTGGGTTCAAGTGATGATGAAGATACAAATTTTAATGTTTCGAGGGTTCAACATCCTCCAAACTCTGCGGTAGATTGCAGAAGTGGCATCACTCCAAGCTCAGTTACATCAACTTCCAGAAAAAAACAGTCCTTCTTTGCTTCAAAGGATATAAATAGTACTCTCACTTATGAAGAATTGAAGGCGCTAGATGATATTGAATTGGCAAATGTCGTTATCTTCGGTAATAAGACATTTCGACCATTGCAGCATCAAGCATGTAAAGCAGCTTTGGCAAAACAAGATTCTTTTATTCTTATGCCTACTGGGGGTGGTAAATCTCTTTGCTATCAGCTTCCAGCAACCCTTCAACCAGGAGTTACAGTAGTTGTATCTCCCTTACTTTCACTTATTCAGGATCAGATAATAACACTTAACTTGAAGTTTGGAATTCCTGCTACATTTTTAAATTCTCAACAAACTGCTTCACAAGCTGCAGCTGTTCTCCAAGAGCTAAGAAAAGACAAGCCTTCGTGCAAGCTCTTGTATGTGACACCAGAGAGAATTGCTGGAAACCAATCATTTATTGGGATTCTAAAATGCATGCATCAAAAGGGACAACTAGCaggttttgttgttgatgaggcACATTGTGTTAGCCAATGGGGACATGATTTCCGGCCTGATTATCGTGGATTAGGATCTCTTAAGCAACATTTTCCATATGTACCTGTCATGGCATTGACTGCCACTGCAACTCACCCAGTTCGTGAGGACATCTTAAATGCTTTAAGAATTCCACATGCAATTGTTCTTGAAAGAAGCTTTGATAGACCGAATTTGAAGTATGAAGTGATTGTTAAGACAAAAGAACCACTGAAGCAGCTTGGACAACTACTAATGGATCGTTTCAAGAGTCAGTGTGGCATTGTATACTGCCTTTCAAAAAGTGAATGCGTTGAGGTATCAAAATTCTTGAATGAGAAATGTAAAATTAAGGCAGCATATTACCATGCTGGCTTGGCTGTTCGCCAGAGAGTTGCTGTTCAAAAGAAATGGCACGATGGAGAGGTCCATATTGTATGTGCAACTATTGCTTTTGGGATGGGGATAGACAAGCCTGATGTTCGATTTGTCATCCACAATACGATGTCAAAATCAATCGAAAGCTATTATCAAGAATCAGGAAGGGCTGGAAGAGATAATCTTCCTGCCGTATGCATTGTTTTATACCAGAAGAAAGATTTTAGTAGAGTAGTATGCATGATAAGAAACGGCAAAGTATATAAAAAGGACAGTTTTAAGACGGCAATGGCTCAAGCTAAAATGATGCAACAGTACTGTGAATTAAAGGATGAATGCCGGAGACAAACCTTACTCAAACACTTTGGAGAATCTTTCGATAGAAAGTCTTGCAAGAATGGCTCTAGCCCTTGTGATAATTGTCTTAAGACTGCATTGTGA 1830 0.3995 METGSSSRRKNKQQHDLELEKVRLISLALEFGYDEHSAIQCFDRLVDLYGDDGRDFITVEHCGDDFLLALAESVQDTEEWDDLREMESQAVGTLNHVLDEGLATCGDASRSFVDIVDDSPQKCQTKFVELGSSDDEDTNFNVSRVQHPPNSAVDCRSGITPSSVTSTSRKKQSFFASKDINSTLTYEELKALDDIELANVVIFGNKTFRPLQHQACKAALAKQDSFILMPTGGGKSLCYQLPATLQPGVTVVVSPLLSLIQDQIITLNLKFGIPATFLNSQQTASQAAAVLQELRKDKPSCKLLYVTPERIAGNQSFIGILKCMHQKGQLAGFVVDEAHCVSQWGHDFRPDYRGLGSLKQHFPYVPVMALTATATHPVREDILNALRIPHAIVLERSFDRPNLKYEVIVKTKEPLKQLGQLLMDRFKSQCGIVYCLSKSECVEVSKFLNEKCKIKAAYYHAGLAVRQRVAVQKKWHDGEVHIVCATIAFGMGIDKPDVRFVIHNTMSKSIESYYQESGRAGRDNLPAVCIVLYQKKDFSRVVCMIRNGKVYKKDSFKTAMAQAKMMQQYCELKDECRRQTLLKHFGESFDRKSCKNGSSPCDNCLKTAL 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03554 609 SMART helicmild6 442 524 IPR001650 -
Tsu01g03554 609 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 247 545 IPR027417 -
Tsu01g03554 609 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 202 607 IPR004589 GO:0004386|GO:0006310
Tsu01g03554 609 Pfam RecQ zinc-binding 536 605 IPR032284 -
Tsu01g03554 609 Pfam DEAD/DEAH box helicase 210 378 IPR011545 GO:0003676|GO:0005524
Tsu01g03554 609 Gene3D - 166 399 IPR027417 -
Tsu01g03554 609 SMART ultradead3 204 408 IPR014001 -
Tsu01g03554 609 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 331 340 IPR002464 -
Tsu01g03554 609 CDD DEXHc_RecQ 202 399 - -
Tsu01g03554 609 Pfam Helicase conserved C-terminal domain 417 523 IPR001650 -
Tsu01g03554 609 Gene3D - 400 608 IPR027417 -
Tsu01g03554 609 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 216 392 IPR014001 -
Tsu01g03554 609 PANTHER DNA HELICASE RECQ FAMILY MEMBER 37 607 - -
Tsu01g03554 609 CDD SF2_C_RecQ 400 533 - -
Tsu01g03554 609 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 414 566 IPR001650 -
Tsu01g03554 609 PANTHER BLOOM SYNDROME PROTEIN 37 607 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03554 Tsu-Chr1 43485656 43491236 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03554 333 522 Eukaryotic Initiation Factors Gene Family AT5G11170 25.641 1.58e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03554 K10899 - gmx:100806070 1004.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03554 01 43485656 43491236 Tsu01g03554 01 43485656 43491236 ECH