LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu01g03550	ATGCTGAGAAATGCTACCTGGACACTTTCAAACTTCTGCCGGGGCAAGCCACAGCCTCCTTTCGATCAGgttAAACCTGCGCTTCCTGCCCTTGCTGGTCTTATTCATTCAAACGATGAAGAAGTCTTAACTGATGCCTGCTGGGCACTTTCATATCTGTCTGATGGTACAAATGATAAAATTCAAGCTGTAATTGAAGCTGGTGTTTGTCCTCGATTGGTTGAGCTTCTACTGCACCCATCTCCTTCAGTGCTAATTCCTGCTCTACGTACTGTTGGAAACATCGTCACTGGAGATGATACGCAAACTCAGGTTATCATCAATCATCAGTCTCTTCCTTGCCTATTTAATCTGCTGAccaataattataaaaaaagcaTCAAGAAGGAAGCTTGTTGGACCATATCAAACATTACAGCTGGGAATAAACAGCAGATTCAGGCTGTGATTGAGGCCAATATATTTGGTCCTTTGGTGAACCTGCTTCAAAATGCTGAATTTGATATTAAGAAAGAGGCTGCTTGGGCAATCTCAAATGCTACATCTGGTGGATCTCACGACCAAATCAAGTACCTAGTAAGTCAGGGGTGTATTAAGCCCTTGTGTGATCTTCTTATCTGTCCCGATCCTAGGATTGTGACAGTTTGTCTAGAAGGCCTTGAAAACATCTTGAAGGTTGGAGAAGCTGATAAGAATATAGGCAATACCGGTGACGTGAACCTATATGCCCAAATGATTGATGATGCTGAGGGTTTGGAGAAAATTGAGAACCTCCAGAGTCATGATAACACAGAGATTTATGAAAAGGCTGTGAAGATTCTTGAGACATACTGgttggaggaagaagatgagaCTATGCCTCCAGGGGATGCCGCACAATCAGGATTCAACTTTGGTAGCGCAGAGGTTCCTTCTGTGCCTTCTGGAGGATTCAACTTCAATCAGTAG	948	0.4167	MLRNATWTLSNFCRGKPQPPFDQVKPALPALAGLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDTQTQVIINHQSLPCLFNLLTNNYKKSIKKEACWTISNITAGNKQQIQAVIEANIFGPLVNLLQNAEFDIKKEAAWAISNATSGGSHDQIKYLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKNIGNTGDVNLYAQMIDDAEGLEKIENLQSHDNTEIYEKAVKILETYWLEEEDETMPPGDAAQSGFNFGSAEVPSVPSGGFNFNQ	315

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu01g03550	315	ProSiteProfiles	Armadillo/plakoglobin ARM repeat profile.	26	68	IPR000225	GO:0005515
	Tsu01g03550	315	Gene3D	-	1	279	IPR011989	-
	Tsu01g03550	315	SUPERFAMILY	ARM repeat	2	283	IPR016024	-
	Tsu01g03550	315	SMART	arm_5	142	182	IPR000225	GO:0005515
	Tsu01g03550	315	SMART	arm_5	99	140	IPR000225	GO:0005515
	Tsu01g03550	315	SMART	arm_5	16	55	IPR000225	GO:0005515
	Tsu01g03550	315	SMART	arm_5	57	97	IPR000225	GO:0005515
	Tsu01g03550	315	SMART	arm_5	185	225	IPR000225	GO:0005515
	Tsu01g03550	315	PANTHER	IMPORTIN SUBUNIT ALPHA-1B	1	303	-	-
	Tsu01g03550	315	Pfam	Atypical Arm repeat	240	286	IPR032413	-
	Tsu01g03550	315	Pfam	Armadillo/beta-catenin-like repeat	186	223	IPR000225	GO:0005515
	Tsu01g03550	315	Pfam	Armadillo/beta-catenin-like repeat	142	181	IPR000225	GO:0005515
	Tsu01g03550	315	Pfam	Armadillo/beta-catenin-like repeat	102	140	IPR000225	GO:0005515
	Tsu01g03550	315	Pfam	Armadillo/beta-catenin-like repeat	58	96	IPR000225	GO:0005515
	Tsu01g03550	315	Pfam	Armadillo/beta-catenin-like repeat	27	54	IPR000225	GO:0005515
	Tsu01g03550	315	PANTHER	IMPORTIN ALPHA	1	303	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu01g03550	Tsu-Chr1	43446616	43450553	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu01g03550	K15042		-	gmx:100797267	615.535

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu01g03550	01	43446616	43450553	Tsu01g03550	01	43446616	43450553	ECH
	Tsu04g04288	04	50993378	50996949	Tsu01g03550	01	43446616	43450553	ECH
	Tsu07g01781	07	17577364	17581006	Tsu01g03550	01	43446616	43450553	ECH
	Tsu07g04418	07	49323304	49328524	Tsu01g03550	01	43446616	43450553	PCT