Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03549 ATGGCGACAAGGAATCGCACTTTGCTTTTCCGAAAATACAGAGATGCATTGAAGAGTGTTCGTGCTCCGTCAGCTTCTTCGCCACCGTCTAAATCTTCCGCCGGTGGTCCCGTCATTGAATTGGTCAGCTCCTCGCTTCTCAATCAAAATCGCTCTTACGCTCCTCTCAGTACAGAAGATCCTGGTAATTCAAGTAAGGGTATAAATCCAATTACTGTGGGGCTACCTCCAGCGTGGGTGGATGTATCTGAAGAAATATCAGCGAATGTGCAACGTGCACGCACAAAAATGGCAGAGTTGTCCAAAGCTCATTCAGATGCCTTAATGCCATCGTTTGTAGATGGTAAGGATAAGCAACATGCTATTGAGTCTCTAACACACGAGATAACTGACTTGATAAAGAGATCAGAGAAGAGACTGCGGAGACTTGCTGCTACAGGGCCTTCTGAGGATTCCAATGTCAGGAAAAATGTGCAGCGTTCTCTTGCTACTGACCTTCAGAGCCTCTCTGTAGAGCTTCGTAAAAAACAATCAAGTTATTTGAAGCGCCTCAGACTGCAAAAAGAGGGTCAAGATGGGGTTGATCTAGAGATCAACATGAATGGAAGTAAATCTAGATATGAAGATGTTGACTTGGACAATATGATATTTAACGAACATCAGATGGCCAAGCTAAAAAAAAGCGAAGCTTTCACagttgaaagagaaaaagagataCAACAGGTTGTGGAATCTGTGAACGAGCTTGCTCAGATTATGAAGGATTTATCAGTACTAGTCATAGACCAGGGAACCATTGTTGATAGAATAGATTACAACATTCAGAATGTGGCAACCACAGTTGAGGATGGCCTCAAACAGCTGCAGAAGGCAGAGAGAACTCAGAAAAAGGGGGGCATGGTAATGTGTGCGTCGGTGCTTCTTATCATGTGCTTTGTTATGTTGGTTCTCTTAGTAATTAAGGAAATTATTTTGTGA 978 0.4233 MATRNRTLLFRKYRDALKSVRAPSASSPPSKSSAGGPVIELVSSSLLNQNRSYAPLSTEDPGNSSKGINPITVGLPPAWVDVSEEISANVQRARTKMAELSKAHSDALMPSFVDGKDKQHAIESLTHEITDLIKRSEKRLRRLAATGPSEDSNVRKNVQRSLATDLQSLSVELRKKQSSYLKRLRLQKEGQDGVDLEINMNGSKSRYEDVDLDNMIFNEHQMAKLKKSEAFTVEREKEIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVEDGLKQLQKAERTQKKGGMVMCASVLLIMCFVMLVLLVIKEIIL 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03549 325 CDD SNARE_syntaxin16 234 290 - -
Tsu01g03549 325 Coils Coil 83 103 - -
Tsu01g03549 325 Pfam SNARE domain 265 317 IPR000727 -
Tsu01g03549 325 ProSitePatterns Syntaxin / epimorphin family signature. 235 274 IPR006012 GO:0005484|GO:0006886|GO:0016020
Tsu01g03549 325 PANTHER SYNTAXIN 1 320 IPR045242 -
Tsu01g03549 325 SMART tSNARE_6 224 291 IPR000727 -
Tsu01g03549 325 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 229 291 IPR000727 -
Tsu01g03549 325 Gene3D - 76 283 - -
Tsu01g03549 325 SUPERFAMILY t-snare proteins 75 284 IPR010989 GO:0016020|GO:0016192
Tsu01g03549 325 SMART SynN_4 70 185 IPR006011 GO:0016020
Tsu01g03549 325 PANTHER TARGET SNARE COILED-COIL-LIKE DOMAIN-CONTAINING PROTEIN-RELATED 1 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03549 Tsu-Chr1 43436696 43441758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03549 1 325 SNARE and Associated Proteins AT5G26980 75.535 4.96e-178 493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03549 K08489 - gmx:100796741 535.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03549 01 43436696 43441758 Tsu01g03549 01 43436696 43441758 ECH