Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03546 ATGGAATTTCAGAAAAAAGGAGAAACATCTGGAACAACAGCTACATTTGTTATTATTGATGAATGGACTGTTACGGTTGCATCAGTTGGGGATTCCCGATGCATATTAGATGCCCAGGGAGGTGTTGTTTCTCTCTTGACAGTTGATCACAGATTGGAAGAAAATGTAGAAGAGAGAGAACGCGTTACTGCCAGTGGTGGTGAAGTAGGAAGACTCAACGTATTTGGAGGCAACGAGgTGGGACCACTTCGCTGCTGGCCCGGTGGATTGTGCCTTTCTAGATCGATAGGCGACACAGATGTGGGAGAATATATCGTTCCAATACCACATGTTAAGCAAGTGAAGCTTTCAAATGCTGGCGGAAGGCTTATCATAGCTTCTGATGGTATTTGGGATACTTTGTCTTCTGATATGGCTGCCAAGTCATGTCGTGGTGTACCTGCAGAACTTGCTGCAAAGCTGGTGGTTAAGGAAGCTCTTAGGTCAAGAGGGCTGAAGGATGATACAACCTGCCTTGTTGTAGATATTATTCCTTCGGACTATCCTATGTCGCCAATGGCAACAACTCCTAGAAAGAAACAGAATATGCTAAGTTCACTTCTCTTTGGAAAGAAATCTCTTACCTCTACAAATAAAGGAACTAATAAGCTTTCTGCAGTTGGGGTTGTGGAAGAGTTATTTGAAGAGGGTTCTGCAATGCTTACAGAGAGGCTAGGTAACGATGTTCCTTCCAATACAAATTCTGGTATTTACCGCTGTGCGGTTTGCCTAGCAGATCAACCCTCTGGTGATGGTTTATCAGTGAACACCGATCATTTTATCACTCCAGTATCTAAACCACGAGAAGGTCTATTACTCTGCGCAAACTGTCAGAAGAAAAAAGATGCCATGGAAGGAAAAAGGACCTAA 909 0.4334 MEFQKKGETSGTTATFVIIDEWTVTVASVGDSRCILDAQGGVVSLLTVDHRLEENVEERERVTASGGEVGRLNVFGGNEVGPLRCWPGGLCLSRSIGDTDVGEYIVPIPHVKQVKLSNAGGRLIIASDGIWDTLSSDMAAKSCRGVPAELAAKLVVKEALRSRGLKDDTTCLVVDIIPSDYPMSPMATTPRKKQNMLSSLLFGKKSLTSTNKGTNKLSAVGVVEELFEEGSAMLTERLGNDVPSNTNSGIYRCAVCLADQPSGDGLSVNTDHFITPVSKPREGLLLCANCQKKKDAMEGKRT 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03546 302 CDD PP2Cc 4 176 IPR001932 -
Tsu01g03546 302 SUPERFAMILY PP2C-like 6 176 IPR036457 -
Tsu01g03546 302 PANTHER PROTEIN PHOSPHATASE 2C 5-RELATED 1 301 - -
Tsu01g03546 302 Gene3D - 2 178 IPR036457 -
Tsu01g03546 302 SMART PP2C_4 4 174 IPR001932 -
Tsu01g03546 302 ProSiteProfiles PPM-type phosphatase domain profile. 1 176 IPR001932 -
Tsu01g03546 302 Pfam Protein phosphatase 2C 7 160 IPR001932 -
Tsu01g03546 302 PANTHER ALPHABET, ISOFORM E-RELATED 1 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03546 Tsu-Chr1 43413841 43417556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03546 1 301 PP2C-type Phosphatase Gene Family AT1G09160 74.086 4.08e-156 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03546 - - gmx:100794630 514.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03546 01 43413841 43417556 Tsu01g03546 01 43413841 43417556 ECH