Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03541 ATGTGGGGTTGTTTTGAAGTTTTGAAGCTTGTAAAAAAGATGAACTATCCAGAAGTTAATGAAATGTGGTATGATATTGATGGGTCATTGAAGGGGTTGGTAGATGATAAAGGAGCTACTGAGATGGAAGATTGGGCCAAGTCACAGCATCATCGTCAATCACGCAAAAAAGACAAACACTCAGAAAACAAAACTATTCTTCTTCTTCGCAGCCGCACGGATAATCTCCGCCACAACCCCACCGGAAACCTCATCAGAGTTCAAAGAGAGATgggaaagaaaaacaaaccGATGAGAGAAAATACCGATGGCACTTTAAAACAATGCTCCTCAACTCTTTTCGTTTCAAATTTACCCTATTCTTTTACAAAAGATCAGCTTGAAGAAACTTTCAGTGAAATTGGACCTATTAGACGCTGTTTCATGGTTGCAAATAAGGGGTCTGACCAACATCGTGGTTTCGGTTATGTTCACTTTGCGGTTGAGAAAGATGCTAACACCGCCGTTGAGCTGAAGAATGGTTCATTGGTTGGTGGCCGAAAAATTTCAGTGAAGCACGCAATGCCTCGTCCACCCcgtgaaaaaaaatcaaaaccagaTCAAGAGGGCAAGAAAGATGATCTCACAGAGTCAAAAAATGATGATAAAGACAATGGATTATCTGGAGTAGAGAAGCCTGTTTCAGTTCCAAAGGAAGAAGAAGAGAAAGTTTTGAATAAACCGAAAAACTCAAGGAAGCCTGTGGAAATAAAAAAAGCAGCTCTTTGTAATGATGCAGCAGATGAGGGGGGTGGCTCAGAAAAACAGAAGGTTGCTAGGACTGTTATATTTGGTGGTCTCATAAATTCTGCTATGGCTGAAGATGTTCACCGCCAAGCCAGAGATATTGGCACTGTGTGTTCTATCAAGTATCCCCTTTCAAGGAATGATCTTCAGCAACATGGTCTGCTGCAAGATGGCTGTACTTCAGATGCTTCAGCTGTACTATATACAAGTGTAAAATCAGCTCGTACTTCCGTTgcaaaattgcataaaaaagaGATAGGAGGTGGAACTGTTTGGGCACGACAGCTTGGCGGTGAGGGCGCCAAGACTCAGAAATGGAAGCTTATTGTCAGAAACCTTCCTTTCAAGgcgaaagaaaatgaaataggAGATGCATTTTCATCTGCGGGGCCTGTATGGGAGGTATTCATTCCACAGAAGTCCGACACAGGTCTTTCAAAGGGTTTTGCATTTGTAAAATTCACCTGCAAGCAAGATGCTGAAAATGCCATTAAAAAACTCAATGGATCAAAGTTTGGGAGTCGTCTCATAGCTGTTGATTGGGCTGTtccaaaaaagatatttagtaGTGATGCCAATGATGCTCCTGCTTCAGAGGAAGGACAACCAAAGGtgatagatgatgatgatgatgatagtacTACTACTGAGGATGATGTTGAGCATAGTGACGAACAATCTGATCATGGAGATGATAGTGATGTTGATGGTGTTGTGGAGGAAGATGTTCCTTCTGAAGATGATTTTGACAAGGAAGCTGACATTGCAAGAAAGGTTCTTAACAACTTGATTATGTCCTCCTCTGCCAAAGACGTGTCTGCAAATAACGATTCTACGTGTTCTGAAGAAAATAAAGAGCCAAAATCCAATGAAACTGTTAAGGGCGCAGATAGTAAAGCATCTAAAGAGTCTGACAAGGTTTCTGCTATTTCTAAGCCCGAGACTTCCAGCAGGTTATCTAATCCTAAGGAAACAGAAGATGATTTGCAAAGAACagtttttataagcaatatcCCCTTTGAATGCAATACTGATGAAGTGAAGCAACGGTTTTCTGCATTTGGAGTAGTAGAATATTTTGCTCCTGTTCTCCACCCATTGACCAAGCGTCCACGAGGGACTGGTTTTCTTAAGTTTAAAACTGTGGAAGCAGCTGATAATGCAATTTCAACTGCCAATGCTGCTTCCGGGATGGGTATTTTAGTGAAGGGTAGACCATTAAAAGTTTTAAAGGCTCTGGACAAGAAATCAGCTCATGAAAAGGAActggagaaagaaaaaaatgaggtTCATGACCACCGCAATCTTTACTTGGCAAAGGAGGGACTTATTCTTGCCGGGACTCCAGCTGCTGAAGGGGTTTCAGCCAGTGACATGGCAAAACGCAAAGATTTGGAGAGGAAAAAGAAGACGAAGCTTCAATCTCCAAATTTCCATGTTTCAAAAACTAGACTTGTTATCTACAACTTACCGAAGTCCATGACTGAAAAACAACTAAAGAAGCTTTGCATTGATGCAGTCATCTCTAGAGCCACCAAGCAAAAACCTGTAATTCGACAGATAAAGATTTTGAAGGATGGAAGGAAAGGAAAGGCTACTCAAGAAAAACAGTTTTCCCGTGGAGTCGCCTTTCTTGAATTTTCAGAGCATCAACATGCCCTTGTTGCTTTGAGAGTTCTTAACAATAATCCTGAAACTTTTGGTCCCGAACACCGGCCAATTGTGGAGTTTGCTCTTGATAATGTTCAAACATTGAAACTACGTAATGCAAAGCTACAATATCAGCAGCAGGCGCCTCGTGATGACAACAGAAACGAAAATGATAAACCCGACAATGCAGGAGTTTACACACATGGAGCCGACAGAAAACGAAAATCTCAAGAGCACGACCAACCAGCAAAAGACTCGGGATTGAATTCAAATAATGAACAAGGTAGTAAAGTGGCAAATGGAAAATCTCCTCATGCAGACAAATCCAAAAGACAGAAAGGCAACCATAAGATTACAGATACCGATGTGTTATCATCAAAAGAAAGTCCAAAAGCTTCAGCGAGGAAGTTAAAGAATAACCAAGATGGCCAGAATCACGGTGCTAAATTACATGAAGGAAAAAATACTGCCATTGACAGTAATAATAGGAAAATATCAGGAAAGAAAGATGACGTGGTATATGGAAAGAGGAAGATGCAAAACCAAGAACAAGCAGGGGAAAAGGTTTCTAGGAAGAGGGCAAAGAAGAATAAAGATTCAATAGGGAAGGACACAGTCGATAAGCTTGACATGCTTATAGAACAATATAAATCCAAGTTCTCACAAAAGGGTTCCCAAGGAAATGACGGTGAGAAAAAACCTCAACAGCTTAGAAAATGGTACCAATCATAA 3168 0.3914 MWGCFEVLKLVKKMNYPEVNEMWYDIDGSLKGLVDDKGATEMEDWAKSQHHRQSRKKDKHSENKTILLLRSRTDNLRHNPTGNLIRVQREMGKKNKPMRENTDGTLKQCSSTLFVSNLPYSFTKDQLEETFSEIGPIRRCFMVANKGSDQHRGFGYVHFAVEKDANTAVELKNGSLVGGRKISVKHAMPRPPREKKSKPDQEGKKDDLTESKNDDKDNGLSGVEKPVSVPKEEEEKVLNKPKNSRKPVEIKKAALCNDAADEGGGSEKQKVARTVIFGGLINSAMAEDVHRQARDIGTVCSIKYPLSRNDLQQHGLLQDGCTSDASAVLYTSVKSARTSVAKLHKKEIGGGTVWARQLGGEGAKTQKWKLIVRNLPFKAKENEIGDAFSSAGPVWEVFIPQKSDTGLSKGFAFVKFTCKQDAENAIKKLNGSKFGSRLIAVDWAVPKKIFSSDANDAPASEEGQPKVIDDDDDDSTTTEDDVEHSDEQSDHGDDSDVDGVVEEDVPSEDDFDKEADIARKVLNNLIMSSSAKDVSANNDSTCSEENKEPKSNETVKGADSKASKESDKVSAISKPETSSRLSNPKETEDDLQRTVFISNIPFECNTDEVKQRFSAFGVVEYFAPVLHPLTKRPRGTGFLKFKTVEAADNAISTANAASGMGILVKGRPLKVLKALDKKSAHEKELEKEKNEVHDHRNLYLAKEGLILAGTPAAEGVSASDMAKRKDLERKKKTKLQSPNFHVSKTRLVIYNLPKSMTEKQLKKLCIDAVISRATKQKPVIRQIKILKDGRKGKATQEKQFSRGVAFLEFSEHQHALVALRVLNNNPETFGPEHRPIVEFALDNVQTLKLRNAKLQYQQQAPRDDNRNENDKPDNAGVYTHGADRKRKSQEHDQPAKDSGLNSNNEQGSKVANGKSPHADKSKRQKGNHKITDTDVLSSKESPKASARKLKNNQDGQNHGAKLHEGKNTAIDSNNRKISGKKDDVVYGKRKMQNQEQAGEKVSRKRAKKNKDSIGKDTVDKLDMLIEQYKSKFSQKGSQGNDGEKKPQQLRKWYQS 1055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03541 1055 PANTHER RNA-BINDING MOTIF PROTEIN 14B 110 966 - -
Tsu01g03541 1055 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 745 859 IPR000504 GO:0003723
Tsu01g03541 1055 SUPERFAMILY RNA-binding domain, RBD 110 354 IPR035979 GO:0003676
Tsu01g03541 1055 CDD RRM1_RBM28_like 112 190 - -
Tsu01g03541 1055 MobiDBLite consensus disorder prediction 856 1055 - -
Tsu01g03541 1055 MobiDBLite consensus disorder prediction 180 246 - -
Tsu01g03541 1055 MobiDBLite consensus disorder prediction 1030 1055 - -
Tsu01g03541 1055 MobiDBLite consensus disorder prediction 466 481 - -
Tsu01g03541 1055 Gene3D - 33 203 IPR012677 -
Tsu01g03541 1055 Gene3D - 523 690 IPR012677 -
Tsu01g03541 1055 Gene3D - 354 467 IPR012677 -
Tsu01g03541 1055 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 182 IPR000504 GO:0003723
Tsu01g03541 1055 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 370 439 IPR000504 GO:0003723
Tsu01g03541 1055 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 595 656 IPR000504 GO:0003723
Tsu01g03541 1055 Gene3D - 744 840 IPR012677 -
Tsu01g03541 1055 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 368 446 IPR000504 GO:0003723
Tsu01g03541 1055 PANTHER RNA-BINDING PROTEIN 28 110 966 - -
Tsu01g03541 1055 MobiDBLite consensus disorder prediction 915 947 - -
Tsu01g03541 1055 MobiDBLite consensus disorder prediction 187 246 - -
Tsu01g03541 1055 MobiDBLite consensus disorder prediction 43 63 - -
Tsu01g03541 1055 MobiDBLite consensus disorder prediction 496 511 - -
Tsu01g03541 1055 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 593 676 IPR000504 GO:0003723
Tsu01g03541 1055 SUPERFAMILY RNA-binding domain, RBD 364 448 IPR035979 GO:0003676
Tsu01g03541 1055 MobiDBLite consensus disorder prediction 532 589 - -
Tsu01g03541 1055 Coils Coil 671 698 - -
Tsu01g03541 1055 CDD RRM3_RBM28_like 593 674 - -
Tsu01g03541 1055 MobiDBLite consensus disorder prediction 895 911 - -
Tsu01g03541 1055 MobiDBLite consensus disorder prediction 863 894 - -
Tsu01g03541 1055 SUPERFAMILY RNA-binding domain, RBD 593 824 IPR035979 GO:0003676
Tsu01g03541 1055 MobiDBLite consensus disorder prediction 453 514 - -
Tsu01g03541 1055 CDD RRM2_RBM28_like 369 445 - -
Tsu01g03541 1055 MobiDBLite consensus disorder prediction 957 1026 - -
Tsu01g03541 1055 SMART rrm1_1 594 672 IPR000504 GO:0003723
Tsu01g03541 1055 SMART rrm1_1 746 838 IPR000504 GO:0003723
Tsu01g03541 1055 SMART rrm1_1 112 185 IPR000504 GO:0003723
Tsu01g03541 1055 SMART rrm1_1 369 442 IPR000504 GO:0003723
Tsu01g03541 1055 MobiDBLite consensus disorder prediction 543 571 - -
Tsu01g03541 1055 CDD RRM4_RBM28_like 745 843 - -
Tsu01g03541 1055 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03541 Tsu-Chr1 43373807 43384903 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03541 372 447 Eukaryotic Initiation Factors Gene Family AT3G11400 36.842 8.23e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03541 K14573 - gmx:100791823 1296.57