Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03534 ATGTCAACTGAGCCGTTACTTCAACCGTCCGATACAGTGTCAGCGTCGCGGCATTGCGGCGGCGAACCTGCGAGGATTTTCGATGAATTGCCGAAAGCAAGTATCGTTTCCGTTTCGCGACCAGAAACCGGTGAAATAAGTCCAATTCTACTTTCTTATACCATTGAATTGCAGTATAAACAGTTCAAATGGCGTCTAAGGAAGAAAGCATCACAAGTTCTCTATTTACAGTTTGCTTTGCGGAAACGTGCAATAATTGAAGAATTTCATGACAAGCAAGGACAGGTAAAAGAATGGCTTCATAGCTTAGGAATAGTAGATCAAACGGTAATGGTGCAAGATGATGAAGAACCTGACGATGGATCTGTACCTACACATCATGAAGACAGTGTCAGTAACAGATATGTCCCATCTGTTGCTGCTCTATCGATAATTCGTCCATCACTAGGAGGTCAGCAGTCTGTTGCAGATAGAGCCAAAGTTGCAATGCAAAATTATCTAGATCTTTTTTTAGGAAACCTAGAGATTGTGAATTCTCGAGAGGTCTGCAAGTTTTTGGAGGTCTCCAGGCTATCGTTTCTACAAGAGTATGGTCCAAAACTGAGAGAAGGATATGTAACGGTGAAACATTTGTCAAATGTTTTACTGGATTCAGATGTAACATGCTTTCCATGTCATTGGTTTCACTTTTGTGATAACAATTGGAAGAAGGTATGGGCAGTTTTGAAGCCTGGGTTTTTGGCCTTGCTGGAGGATCCCTTCAACAACAAGCCCCTGGATATAATTATGTTTGATGTCCTTCCATCCTCAACTGGCAAGGGAGAGACCAAAATCTCTTTAGCTGAACCTGTAAAGGAACGCAATCCTTTGCGTTACACATTTAAGGTTACTGGCGGAAACAGGAGCATATGCTTGAGAACTATCAGCAGTGCTAAAGTTAAAACTTGGGTTACTGCAATTAATGAAGCTGGTCTAAGACCTACAGAGGGGTGGTGTTCTCCTCATCGCTTTGGTTCATTTGCTCCCGTAAGAGGTTTGACTGTAGACGGAAGCCAAGCCCAATGGTATGTAGATGGACAAGCCGCATTTGAAGCaattgcttcttcaattcaagATGCAAAATCAGAGATCTTCATAACAGGTTGGTGGCTGTGTCCAGAGCTATACATGAGGCGGCCTTTTGATAGTTTTCCTACCTTTAGGTTAGACTCATTATTGGAAGAAAAAGCTAAACAAGGGGTTCAGATCTACGTCCTTCTCTATAAGGAGGTTTCTATAGCTTTGAAAATCAATAGTTTGTACAGTATGAGAAGACTTCTCAAAATTCATGAGAATGTGAGGGTATTACGCTATCCCGACCATTTTGCTTCTCGTGTGTACTTATGGTCACACCATGAAAAACTTGTAATTATTGATTACAAGGTTTGCTTTCTTGGAGGATTAGATTTATGCTTTGGACGATATGACACACCCGAGCATCAAGTGGGTGATTGTCCCTCTGTAATATGGCCTGGAAAGGACTATTACAATCCAAGAGAATCTGAACCAAATTCATGGGAAGACACCATGAGCGACGAATTGGATCGCCACAAATATCCCCGTATGCCATGGCATGATGTCCATTGTGCTCTTTGGGGACCTGCATGTCGTGACATTGCTCGGCACTTTGTTCAACGTTGGAATCATGCTAAGAGAACTAAAGCTCCAAATGAACATGAGATTCCTCTACTTATGCCTCACCATCACATGGTCATCCCACATTACATGGGAAGAAGCAAAGAATTTGACATTGATGATAAGAAGGATGAAGATgacaagaaagaaattgaaaggCAGGATTCGTTCTCCTCACAATCTCCATTACAAGACATACCACTGCTTTTACCTCAAGAAGCTGATGGAGCAGTTACTTCGAGTGAAGATGATAGAAATTCCAGCGAAAGTTCTCCGTTATTGTCCCAAAATCTGAACGGTGAAACTTTAGTTTCAGAACACCAGAAGAAAGAGCTTCAAGATGAAGCTGTTGCTTTTAATTTAGAGGATCAATGCATTGTTGATGCTGTAGATGATTGGTGGGAAACACCAGAAGGTACTAATGATGATGCCACTACTTTGGAATATGGACAAGTTGGTCCACGTACTTCTTGTCACTGTCAGGTAATCAGAAGTGTAAGCCAGTGGTCTGTTGGAACAAGTCAAACTGAAGAAAGTATTCACACTGCATATTGTTCTCTTATTGAAAAGGCAAAGCATTTTATCTACATAGAGAACCAATTTTTCATATCAGGTCTAGCAATGGATGACACAATACAAAACCGTGTTTTGGAAGCAATATACAGGCGTATTTTGCAAGCCCACAAAGAACAGGAAGATTTTAGAGTTATAATTGTGTTGCCCCTCTTGCCTGGCTTCCAGGGTGGTCTGGATGATGGTGGTGCTGCAACTGTGAGAGCCTTAACACATTGGCAGTATAGAACAATTTCTAGAGAAAGGCACTCCATACTACACAATCTGGAAGCTATACTTGGTCGTAAGACACatgattatatttctttttatggtCTAAGATCTCATGGTAGACTTAACCCAGATGGTCCTATGGCAACATGTCAGGTATATGTACACAGTAAGTTGATGATAATTGATGACCGTGTAGCTTTGATAGGGTCGTCTAATATAAACGACCGGAGCTTGCTTGGATCAAGAGACTCTGAGATTGGAGTGGTTATAGAAGACAAAGAATATGTTGAATCACTGATGAACGGAAAGCCGTGGAAGGCTGGAAAATTTTCCCATAGCCTTCGCTGTTCCCTATGGTCTGAGCATCTTGGTCTTCATACCGGAGAGATTAATAAAATTACTGATCCAGTAGCTGATTCAACCTACAAGGATTTGTGGTTAGCTACTGCAAAGGAAAATACTAGAATCTACCATGAAGTCTTTGCTTGCATTCCAAATGATCAAATACACTCAAGAGCTGCACTTCGGCAAAGCATGGCACACTGGAAGGAAAAACTTGGCCAAACCATCATAGATTTAGGAATAGCCCCTGAGAAATTAATCTGTCATGAGCATGGAGAAAGAAAAGTAATAGACCCAATAGATAGATTGAAGTGTATAAAGGGACATCTTGTTTCCTTTCCTTTGGATTTCATGCGCGAGGAAGATTTAAGACCAGCTGTTATTGAGAGTGAGTTTTATGTAGCTCCTCAAGTATATCATTAA 3225 0.4059 MSTEPLLQPSDTVSASRHCGGEPARIFDELPKASIVSVSRPETGEISPILLSYTIELQYKQFKWRLRKKASQVLYLQFALRKRAIIEEFHDKQGQVKEWLHSLGIVDQTVMVQDDEEPDDGSVPTHHEDSVSNRYVPSVAALSIIRPSLGGQQSVADRAKVAMQNYLDLFLGNLEIVNSREVCKFLEVSRLSFLQEYGPKLREGYVTVKHLSNVLLDSDVTCFPCHWFHFCDNNWKKVWAVLKPGFLALLEDPFNNKPLDIIMFDVLPSSTGKGETKISLAEPVKERNPLRYTFKVTGGNRSICLRTISSAKVKTWVTAINEAGLRPTEGWCSPHRFGSFAPVRGLTVDGSQAQWYVDGQAAFEAIASSIQDAKSEIFITGWWLCPELYMRRPFDSFPTFRLDSLLEEKAKQGVQIYVLLYKEVSIALKINSLYSMRRLLKIHENVRVLRYPDHFASRVYLWSHHEKLVIIDYKVCFLGGLDLCFGRYDTPEHQVGDCPSVIWPGKDYYNPRESEPNSWEDTMSDELDRHKYPRMPWHDVHCALWGPACRDIARHFVQRWNHAKRTKAPNEHEIPLLMPHHHMVIPHYMGRSKEFDIDDKKDEDDKKEIERQDSFSSQSPLQDIPLLLPQEADGAVTSSEDDRNSSESSPLLSQNLNGETLVSEHQKKELQDEAVAFNLEDQCIVDAVDDWWETPEGTNDDATTLEYGQVGPRTSCHCQVIRSVSQWSVGTSQTEESIHTAYCSLIEKAKHFIYIENQFFISGLAMDDTIQNRVLEAIYRRILQAHKEQEDFRVIIVLPLLPGFQGGLDDGGAATVRALTHWQYRTISRERHSILHNLEAILGRKTHDYISFYGLRSHGRLNPDGPMATCQVYVHSKLMIIDDRVALIGSSNINDRSLLGSRDSEIGVVIEDKEYVESLMNGKPWKAGKFSHSLRCSLWSEHLGLHTGEINKITDPVADSTYKDLWLATAKENTRIYHEVFACIPNDQIHSRAALRQSMAHWKEKLGQTIIDLGIAPEKLICHEHGERKVIDPIDRLKCIKGHLVSFPLDFMREEDLRPAVIESEFYVAPQVYH 1074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03534 1074 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 870 897 IPR001736 GO:0003824
Tsu01g03534 1074 Pfam PLD-like domain 743 917 IPR025202 -
Tsu01g03534 1074 CDD PLDc_vPLD1_2_yPLD_like_2 730 914 - -
Tsu01g03534 1074 SMART pld_4 870 897 IPR001736 GO:0003824
Tsu01g03534 1074 SMART pld_4 460 487 IPR001736 GO:0003824
Tsu01g03534 1074 MobiDBLite consensus disorder prediction 639 657 - -
Tsu01g03534 1074 Gene3D Endonuclease Chain A 346 585 - -
Tsu01g03534 1074 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 460 487 IPR001736 GO:0003824
Tsu01g03534 1074 PANTHER PHOSPHOLIPASE D ZETA 2 17 1071 - -
Tsu01g03534 1074 SUPERFAMILY Phospholipase D/nuclease 324 580 - -
Tsu01g03534 1074 SUPERFAMILY PH domain-like 232 329 - -
Tsu01g03534 1074 Gene3D - 201 323 IPR011993 -
Tsu01g03534 1074 MobiDBLite consensus disorder prediction 591 613 - -
Tsu01g03534 1074 PIRSF PLD_euk 587 1074 IPR016555 GO:0004630|GO:0006654|GO:0048017
Tsu01g03534 1074 PIRSF PLD_euk 30 594 IPR016555 GO:0004630|GO:0006654|GO:0048017
Tsu01g03534 1074 ProSiteProfiles PH domain profile. 199 325 IPR001849 -
Tsu01g03534 1074 CDD PLDc_vPLD1_2_yPLD_like_1 353 498 - -
Tsu01g03534 1074 PANTHER PHOSPHOLIPASE D 17 1071 IPR015679 -
Tsu01g03534 1074 SMART PH_update 200 327 IPR001849 -
Tsu01g03534 1074 MobiDBLite consensus disorder prediction 591 657 - -
Tsu01g03534 1074 Gene3D Endonuclease Chain A 687 933 - -
Tsu01g03534 1074 Pfam Phospholipase D Active site motif 460 487 IPR001736 GO:0003824
Tsu01g03534 1074 Pfam PH domain 226 323 IPR001849 -
Tsu01g03534 1074 SUPERFAMILY Phospholipase D/nuclease 708 920 - -
Tsu01g03534 1074 CDD PH_PLD 177 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03534 Tsu-Chr1 43287483 43297486 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03534 25 1074 Phospholipase D Gene Family (Wang group) AT3G05630 66.950 0.0 1416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03534 K01115 - gmx:100796914 1862.43