Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03529 ATGAAAACATCAACTACCTTATACACTCTTGTTTCCTTCATTATTattctctccttcttctctcccTCTCTAGCATCTCTTCTTCCCTCCCCAAATACCACATGCAACATTACACCTTACCCATCTTTTTGTACTACTACTCTACCTCCTAACTATGTATCTATACATGATCAAACCCTTTTCTTCATTCAACAATCTTTATCAATAACTAATAccatttttcaattaatctcTTCTTATTTTAACCAATCTAATATTGCATATTCCACTTTACTTGTCCTTCAAGATTGTCTTAATCTTTCtgaattaaatattgatttcttGTCCAATGTTCTCCAAGCCATAGAAACTAATACTACTACAATGAGTAGTAATCAAGCTTATGATTTGCTAACCTTGCTTAGTGCTGTTTTAACTAATCATCAAACATGTTTAGATGGTTTTAATGAAGTAAATCCTTATCCAAATATTAGCACTACTTTATCAAACCCTCTTTCTGATGGGACTAAATTTTATAGGatatctctttcttttttcaatcaATATCGAGTTAACACCATCATTGCAAGATTAACAGAAAAAGCAATTACAATGAATAATAGAAAGTTGTTACAAACAAGTGTTGACAATGTGATTGTGACACaaaaagttattgttaaccctgATGGATCTGGAGATTTTGTTACTATAAATGAAGCTGTGGATGCTGCACCTAACAAAACAGGCACCAACAATGGCTACCATGTAATTTATGTTGTTGCTGGGATTTATAATGAGTATGTGTctattgctaaaagtaaagagAATCTAATGATTGTCGGAGATGGTATCGGTCGGACTGTGATTACCGGTAATCGTAGCGTGGTTGATGGTTGGACTACTTTCCAGTCTGCAACTTTTGctgtACTGGGAAAAGGGTTTGCTGCTGTGAACATAACATTTCAAAACACCGCGGGATCAAGCAAGCATCAAGCAGTTGCGGTCCGAAACGGAGCTGACATGTCTGTTTTCTACAATTGTAGCTTCGAAGGTTACCAAGACACGTTATACGCGCATTCTCTTCGACAATTCTACAAAAACTGTGATATTTACGGAACAGTTGATTTCATATTCGGCAATGCAGCAGCAATATTCCAAAACTGTAACATATATCCAAGACTACCAATGCAAAATCAATTCAATGCAATTACAGCACAAGGAAGAACAGATCCTAATCAAAACACAGGATTTTCAATATGGAATTGTTACATTGTAGCAGCTAGTGAATtagggggtgcaaataataattataatggTATAAAAACATATTTGGGTAGGCCTTGGAAGGAGTATTCAAGAACAATTTATATGCAATGTTTTATTGATGGTTTGATTGATTCAAAAGGTTGGATTGAATGGTTAGATGATTTTGCATTAAACACATTGTATTATGCAGAGTTTGCTAATTGGGGACAAGGTTCATATACTAGTAATAGAGTCACATGGAAAGGGTACCATcaaattgatggaaaaaatgCTGATGAATTCACAGTTTACAAATTTATTCAAGGTGACATGTGGTTGCCTAAGACAGGAGTGCCTTTTAGAGCTGGATTATAg 1599 0.3164 MKTSTTLYTLVSFIIILSFFSPSLASLLPSPNTTCNITPYPSFCTTTLPPNYVSIHDQTLFFIQQSLSITNTIFQLISSYFNQSNIAYSTLLVLQDCLNLSELNIDFLSNVLQAIETNTTTMSSNQAYDLLTLLSAVLTNHQTCLDGFNEVNPYPNISTTLSNPLSDGTKFYRISLSFFNQYRVNTIIARLTEKAITMNNRKLLQTSVDNVIVTQKVIVNPDGSGDFVTINEAVDAAPNKTGTNNGYHVIYVVAGIYNEYVSIAKSKENLMIVGDGIGRTVITGNRSVVDGWTTFQSATFAVLGKGFAAVNITFQNTAGSSKHQAVAVRNGADMSVFYNCSFEGYQDTLYAHSLRQFYKNCDIYGTVDFIFGNAAAIFQNCNIYPRLPMQNQFNAITAQGRTDPNQNTGFSIWNCYIVAASELGGANNNYNGIKTYLGRPWKEYSRTIYMQCFIDGLIDSKGWIEWLDDFALNTLYYAEFANWGQGSYTSNRVTWKGYHQIDGKNADEFTVYKFIQGDMWLPKTGVPFRAGL 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03529 532 CDD PMEI-like_3 33 182 - -
Tsu01g03529 532 Gene3D - 210 532 IPR012334 -
Tsu01g03529 532 Gene3D Invertase/pectin methylesterase inhibitor family protein 31 182 IPR035513 -
Tsu01g03529 532 Pfam Pectinesterase 217 518 IPR000070 GO:0030599|GO:0042545
Tsu01g03529 532 ProSitePatterns Pectinesterase signature 2. 363 372 IPR033131 -
Tsu01g03529 532 SUPERFAMILY Pectin lyase-like 216 531 IPR011050 -
Tsu01g03529 532 TIGRFAM PME_inhib: pectinesterase inhibitor domain 9 167 IPR006501 GO:0004857
Tsu01g03529 532 PANTHER PECTINESTERASE 14 531 - -
Tsu01g03529 532 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 17-RELATED 14 531 - -
Tsu01g03529 532 Pfam Plant invertase/pectin methylesterase inhibitor 32 173 IPR006501 GO:0004857
Tsu01g03529 532 SMART PMEI_2 26 178 IPR006501 GO:0004857
Tsu01g03529 532 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 32 181 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03529 Tsu-Chr1 43239424 43242039 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03529 4 532 Carbohydrate Esterase AT4G02330 48.168 4.24e-179 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03529 K01051 - gmx:100810329 766.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03529 01 43239424 43242039 Tsu01g03529 01 43239424 43242039 ECH