Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03528 ATGGCTGAGGAAGATCCACAAGGAAAGAAGAGAATCATCATAATCAGCGTATCAGCTTTTTTACTAGTGGCTATGGTGGTTGCAGTTACCGTTGGGGTAAATTTTACTAATCGCGAggattctgattctgattctgaAGGTAACAACAATAAGCCTCACGTGGCTTCAACGGTAAAAGCAGTGAAAGCCTTTTGCAAACCAACTGATTATAAAAAAGAATGCGAGGATAATCTATTAGCAAATGTAGGCAACACAACGGATTCAAGAGAACTTATTAAACTTGCTTTCAATATTACCGTTGGAAAAATCGGGGATGGAATCAAGAAAACTCATTTATTGGAAGACGTTGAAAAAGAACCTAGGGCAAAAATGGCACTCGACACATGCAAGAAATTAATGAATCTATCAATTGGCGAATTCGATAGATCGCttgagagaataaaaaaatttgatctcAACAATCTCGAAAGTTTTCTTATGAGTTTAAGAGTTTGGTTAAGTGGTGCAATTACATATCAAGAAACTTGTTTAGATGCTTTCGAGAATACTACTAGCGATGCTAGTAAGAAAATGAAGACGATCTTAACTTCTTCGATGCACATGACTAGCAATGCACTTGCAATCATTACGGATTTATCGGAtactattttgaatttgaattcgtCAAGAAGCGGACGTCAACTTATCGATAATGAACCAATTGTTGAACATGATGATGTTAATAAGGTTCCTTCTTGGGTTCATGATAGTTCAAGTGTTGGTGTTCGTAGACTTCTTAATGTACCTGAAAATAAACTCAATCCAGATGCAATTGTGGCTAAAGATGGTAGTGGGAAATTTAAGAGTATTAATGATGCTTTGAAGCAAGTTCCAGAAAAGAACCAAAAAccatttgttatttttattaaggaAGGTGTTTATAATGAGTTTGTTGAAGTTACCAAAAAAATGACTCATGTTGTGTTTTTTGGTGAGGGTCCAAACAAGACAAGAATTATtggcaaaaaaaatttcatagaTGGGATTAACACTTACAACACTGCCACTGTTGCTGTTCAAGGAGATTATTTTGTGGCAATCAATATGGGATTTGAGAATGCAGCAGGACCTCACAAACATCAAGCAGTAGCCATAAGAGTCCAAGCAGACAAAACAATCTTTTACAGATGTGCAATGGATGGATATCAAGACACATTATATGCTCACGCCTTGCGTCAATATTATCGCGAATGTACAATTTCCGGAACCATTGATTTCGTCTTTGGCGATGCAGTAGCTGTTTTTCAAAACTGCACTTTCATTGTAAGAAAACCATTACAAAACCAACAATGTATTGTAACTGCACAAGGTAGAAAAGAGAGTCACCAACCATCTGGAATCGTTATTCAAGATTGCTACATTGTGCCGGAaaatcaaaatgtaaaattCGAACACAAAGCATATCTTGCTCGTCCGTGGAAGAATTTTTCAAGGACTGTTTTCATGAAAACTTACATTGGTGATTTCATTCAGCCTGATGGATATATGCCATGGCAAGGACCAAATGGTACTCTTACTGGCATGGATACTTGCTATTATGCCGAGTACAATAATATTGGCCCTGGTTCGGATAAATCAAAACGCGTAAAATGGCCCGGAATTAAGGTTCTTACTTCACAGGCTGCAAGTATTTTTTTACCATCTATGTTCTTTCATGGAGATGATTGGATTAGGGTTACTAGAATTCCTTACAATTCTGGTGAGAAATCCCCCAAGCTACCTAACTCTTCTGGTGAGAAACCCCCTAAGCagtaa 1794 0.3528 MAEEDPQGKKRIIIISVSAFLLVAMVVAVTVGVNFTNREDSDSDSEGNNNKPHVASTVKAVKAFCKPTDYKKECEDNLLANVGNTTDSRELIKLAFNITVGKIGDGIKKTHLLEDVEKEPRAKMALDTCKKLMNLSIGEFDRSLERIKKFDLNNLESFLMSLRVWLSGAITYQETCLDAFENTTSDASKKMKTILTSSMHMTSNALAIITDLSDTILNLNSSRSGRQLIDNEPIVEHDDVNKVPSWVHDSSSVGVRRLLNVPENKLNPDAIVAKDGSGKFKSINDALKQVPEKNQKPFVIFIKEGVYNEFVEVTKKMTHVVFFGEGPNKTRIIGKKNFIDGINTYNTATVAVQGDYFVAINMGFENAAGPHKHQAVAIRVQADKTIFYRCAMDGYQDTLYAHALRQYYRECTISGTIDFVFGDAVAVFQNCTFIVRKPLQNQQCIVTAQGRKESHQPSGIVIQDCYIVPENQNVKFEHKAYLARPWKNFSRTVFMKTYIGDFIQPDGYMPWQGPNGTLTGMDTCYYAEYNNIGPGSDKSKRVKWPGIKVLTSQAASIFLPSMFFHGDDWIRVTRIPYNSGEKSPKLPNSSGEKPPKQ 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03528 597 Gene3D Invertase/pectin methylesterase inhibitor family protein 56 214 IPR035513 -
Tsu01g03528 597 CDD PMEI-like_3 63 213 - -
Tsu01g03528 597 Pfam Pectinesterase 269 567 IPR000070 GO:0030599|GO:0042545
Tsu01g03528 597 TIGRFAM PME_inhib: pectinesterase inhibitor domain 55 212 IPR006501 GO:0004857
Tsu01g03528 597 PANTHER PECTINESTERASE 10 582 - -
Tsu01g03528 597 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 60 213 IPR035513 -
Tsu01g03528 597 Pfam Plant invertase/pectin methylesterase inhibitor 60 208 IPR006501 GO:0004857
Tsu01g03528 597 SUPERFAMILY Pectin lyase-like 268 578 IPR011050 -
Tsu01g03528 597 SMART PMEI_2 56 208 IPR006501 GO:0004857
Tsu01g03528 597 ProSitePatterns Pectinesterase signature 1. 294 313 IPR018040 -
Tsu01g03528 597 PANTHER PECTINESTERASE 10 582 - -
Tsu01g03528 597 ProSitePatterns Pectinesterase signature 2. 413 422 IPR033131 -
Tsu01g03528 597 Gene3D - 263 581 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03528 Tsu-Chr1 43235840 43238148 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03528 3 580 Carbohydrate Esterase AT3G05610 47.871 0.0 574