Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03527 ATGTCAGGAGGAGATGCACAGAAAGGAAGAAGAGTCGCCGTAATTGGCGTATCTTCATTGTTATTGGTGGCTATGGTTATTGCTGTCACAGTTGATATAAACCAAAATGGTTTGCAAGACGATGTAGAGAGCAATAGCAGAAATCATGTTGCTTCCACAATGAGAGCAGTACAAACAGTTTGTCATCCCACCGAATACAAGAAAGAATGTGTGGATGCACTCACCTCAGAAGCGGAGGCCGGCAATGTCACTGACCCAAAAGAACTTATTAAAATAGCATTCAATGTTACCATAAGAAAAATTGGTGAAAAACTCAAAGAAACTGATTTATTGGATGAGGTTGAGAAGGATCCTAGATCAAAGGATGCACTTGATACTTGCAAGCAACTTATGGATCTCTCCATTGGTGAATTCACAAAGTCACTTAATGGAATGGGCCAGTTTCATCTTCAAGATCTTGACAAATTCCTCATGAATGTTAAGGTTTGGCTCAATGGTGCTGTTACATACATGGATACATGCGTGGATGGGTTCGAGAACACTACGACCGATGCTGGTATGAAGATGAAGGAGTTATTAACATCAAGCATGCACATGGGTAGCAATGCCGTTGCCATTATTTCCGATTTCGCTGACACTGTCTCTGAGTATAACATCAGCAAAATTATCGGTGGAGGACGTCGTCCCCTTGAAGATTCTGAGACTCCTTCTTGGGTTGATCATCGCAAACTCCTTGATGCAAATACAAACTCATTCAAACACAAGCCTGATGTTACCGTAGCTTTAGATGGTAGCGGCGATGTTAAGAGCATCAATGAGGCATTGACAAAGATTCCTAACAAGAACAAAAATCCATTTGTGATCTACATTAAGGCCGGTGTTTACGCAGAGTATGTTGAAGTTTTGAAGAATATGACCAATGTCGTTTTTGTTGGTGAAGGTGGTAAGAAGTCAGTAATCACCGGCAACAGAAATTTCATCGATGGAATTAACACTTACAGAACCGCCACCGTTGCTATTCAAGGAGATCACTTTACCGCCATTAACATGGGTTTCGAGAACTCAGCTGGTCCACACAAACATCAAGCAGTGGCACTAAGGGTTCAAGGAGATAAGTCCATCTTCTTCAATTGCTCAATGGATGGATATCAAGACACACTTTATGTACACACCATGCGTCAATACTATCGCGATTGCACCATTTCAGGTACCATTGACTTCGTATTTGGTAATGCTTTAGCTGTTTTCCAAAACTGCAAATTCGTGGTTCGTAAGCCTATGTCAAACCAGCAATGCATTGTGACTGCACAAGGAAGGAAAGAAAAATTCCAACCATCAGCAATAGTCATCCAAGGAGGCTCCATAGTTTCCGACCCTGAGTATTACCCGGTCAGGTTTGACAACAAGGCCTACTTAGCCCGTCCATGGAAGAACTTCTCTAGGACTATCTTTATGGATACCTTCATCGATGATTTGATTCAACCCGATGGTTATTTGCCATGGCAAACAGAATTTGGTCCTACCGGCATGGACAGTTGCTTCTATGCTGAGTACCATAACTATGGCCCCGGTTCAGACAAATCAAAGCGTGTGAAATGGCCCGGAATCTGGAACATCAATTCTAAGGTGGCACACCATTTTGCACCATCCAAGTACTTCCATGGTGCTGATTGGATCGAGGAAACCGGCATTCCTTTCTTTGCCGGTATTCCTGAACACAAAAAGCACCAAAAGACAGTGCTTAAATGGTGA 1752 0.4252 MSGGDAQKGRRVAVIGVSSLLLVAMVIAVTVDINQNGLQDDVESNSRNHVASTMRAVQTVCHPTEYKKECVDALTSEAEAGNVTDPKELIKIAFNVTIRKIGEKLKETDLLDEVEKDPRSKDALDTCKQLMDLSIGEFTKSLNGMGQFHLQDLDKFLMNVKVWLNGAVTYMDTCVDGFENTTTDAGMKMKELLTSSMHMGSNAVAIISDFADTVSEYNISKIIGGGRRPLEDSETPSWVDHRKLLDANTNSFKHKPDVTVALDGSGDVKSINEALTKIPNKNKNPFVIYIKAGVYAEYVEVLKNMTNVVFVGEGGKKSVITGNRNFIDGINTYRTATVAIQGDHFTAINMGFENSAGPHKHQAVALRVQGDKSIFFNCSMDGYQDTLYVHTMRQYYRDCTISGTIDFVFGNALAVFQNCKFVVRKPMSNQQCIVTAQGRKEKFQPSAIVIQGGSIVSDPEYYPVRFDNKAYLARPWKNFSRTIFMDTFIDDLIQPDGYLPWQTEFGPTGMDSCFYAEYHNYGPGSDKSKRVKWPGIWNINSKVAHHFAPSKYFHGADWIEETGIPFFAGIPEHKKHQKTVLKW 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03527 583 SMART PMEI_2 52 206 IPR006501 GO:0004857
Tsu01g03527 583 TIGRFAM PME_inhib: pectinesterase inhibitor domain 50 208 IPR006501 GO:0004857
Tsu01g03527 583 Pfam Pectinesterase 257 555 IPR000070 GO:0030599|GO:0042545
Tsu01g03527 583 Pfam Plant invertase/pectin methylesterase inhibitor 56 206 IPR006501 GO:0004857
Tsu01g03527 583 Gene3D - 251 570 IPR012334 -
Tsu01g03527 583 PANTHER PECTINESTERASE 10 571 - -
Tsu01g03527 583 PANTHER PECTINESTERASE 10 571 - -
Tsu01g03527 583 ProSitePatterns Pectinesterase signature 2. 401 410 IPR033131 -
Tsu01g03527 583 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 56 210 IPR035513 -
Tsu01g03527 583 CDD PMEI-like_3 59 211 - -
Tsu01g03527 583 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 210 IPR035513 -
Tsu01g03527 583 SUPERFAMILY Pectin lyase-like 255 569 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03527 Tsu-Chr1 43231921 43234062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03527 5 570 Carbohydrate Esterase AT3G05610 47.535 0.0 569
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03527 K01051 - gmx:100776244 907.131