Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03525 ATGACATTAGCCAATAGGATTGTCATGACACCAAAGTTGAAGGGTGTAGCGCCGTCGTCAAAGCTCGAAGCAGACATGGGTATCGATCTTAAAGCAGGAGGTAAGAGCAAGAAGTCCAAAAGAACAGCACCAAAGTCCAATGATATCTATCTCAAGCTTTTGGTCAAGCTTTATCGGTTCCTTGTTCGGAGAACTGGAAGCAATTTCAATGCTGTTATCCTCAAGAGGTTGTTCATGAGCAAGGTTAACAAGCCTCCACTATCTTTGTCAAGATTGATTAAGTACACTAAGGGCAAGGAAGGTAAAATTGCTGTGGTGGTGGGTGCCATAACTGATGATATCCGTGTTTATGAAGTTCCAGCCATCAAGGTTACTGCACTCAGGTTTACCGAGACCGCAAGGGCAAGAATAGAGAAGGCCGGTGGTGAATGCTTGACATTCGATCAGTTGGCTCTTAGGGCCCCATTGGGACAAAACACAGTTCTTCTTAGAGGCCCAAAGAATGCTCGTGAAGCTGTGAAGCACTTTGGTCGTGCTCCTGGTGTCCCACACAGCCACACCAAGCCTTATGTGAGAGCAAGTGGAAGGAAGTTTGAGAAGGCTAGAGGAAAGAGGAACAGCCGTGGATTCAGAGTTTGA 639 0.4632 MTLANRIVMTPKLKGVAPSSKLEADMGIDLKAGGKSKKSKRTAPKSNDIYLKLLVKLYRFLVRRTGSNFNAVILKRLFMSKVNKPPLSLSRLIKYTKGKEGKIAVVVGAITDDIRVYEVPAIKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGRAPGVPHSHTKPYVRASGRKFEKARGKRNSRGFRV 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03525 212 PANTHER 60S RIBOSOMAL PROTEIN L18 26 211 IPR000039 GO:0003735|GO:0005840|GO:0006412
Tsu01g03525 212 SUPERFAMILY Ribosomal proteins L15p and L18e 45 164 IPR036227 -
Tsu01g03525 212 Pfam Ribosomal protein 60S L18 and 50S L18e 27 212 IPR021131 -
Tsu01g03525 212 PANTHER 60S RIBOSOMAL PROTEIN L18-1-RELATED 26 211 - -
Tsu01g03525 212 Gene3D - 26 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03525 Tsu-Chr1 43220857 43225229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03525 28 212 Cytoplasmic Ribosomal Protein Gene Family AT2G47570 76.882 2.00e-102 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03525 K02883 - gmx:100499789 354.369
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03525 01 43220857 43225229 Tsu01g03525 01 43220857 43225229 ECH
Tsu07g04442 07 49498386 49500342 Tsu01g03525 01 43220857 43225229 PCT