Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03517 ATGAGTGGCCGCTCAAGTTGCACATTATATGTAGGAAATCTTCCCGGCGATATTCGTATGAGAGAAGTAGAGGATCTTTTCTATAAGTATGGTCCTATCGTTGACATTGATTTGAAGATCCCTCCAAAACCACCAGGTTATGCTTTTGTTGAGTTTGAGGATGCTCGTGATGCTCAAGATGCTATTTACTATAGAGATGGTTATGATTTTGATGGTTATCGATTACGGGTTGAACTTGCGCATGGTGGACGGGGAAGTTCATCATCAGTAGATCGATACAGTAGGAATAATGGTAGAAGTGGTAGCCGTGGAGTTTCCAGGCGATCTGACTATCGTGTTTTGGTGACCGGATTACCTCCTTCTGCTTCGTGGCAAGACCTGAAAGATCACATGCGTAAAGCTAGTGATGTGTGTTTTTCTCAAGTGTTCCGTGAGCGTGGAGGCTTGAATGGGATAGTGGATTATACCAATTATAGTGATGTGAAATATGCTATCAGGAAACTTGATGACTCTGAATTTCGAAATGCATTTTCTCGTGCATACAAATGGGTGAGGGAATATGATCGGAGTTATTCCAGAAGTCCCAGTCGTGATTCAAGGAGGAGCTATTCTCGAAGCCGCAGCCCATATGTATCACGAAGTCGAAGTCGTAGCTACAGTGGCAGGAGCAGAAGTTTGTCTCCAAAAGCAAAACATTCTCGGCGCTCATTATCCCTTTCAAGGTCAGTTTGTCTTCAGTCTTGA 744 0.4355 MSGRSSCTLYVGNLPGDIRMREVEDLFYKYGPIVDIDLKIPPKPPGYAFVEFEDARDAQDAIYYRDGYDFDGYRLRVELAHGGRGSSSSVDRYSRNNGRSGSRGVSRRSDYRVLVTGLPPSASWQDLKDHMRKASDVCFSQVFRERGGLNGIVDYTNYSDVKYAIRKLDDSEFRNAFSRAYKWVREYDRSYSRSPSRDSRRSYSRSRSPYVSRSRSRSYSGRSRSLSPKAKHSRRSLSLSRSVCLQS 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03517 247 MobiDBLite consensus disorder prediction 192 247 - -
Tsu01g03517 247 Gene3D - 111 182 IPR012677 -
Tsu01g03517 247 PANTHER PRE-MRNA-SPLICING FACTOR SF2-LIKE PROTEIN 3 244 - -
Tsu01g03517 247 MobiDBLite consensus disorder prediction 205 226 - -
Tsu01g03517 247 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 3 244 - -
Tsu01g03517 247 Gene3D - 2 110 IPR012677 -
Tsu01g03517 247 CDD RRM1_SF2_plant_like 8 79 - -
Tsu01g03517 247 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 175 IPR000504 GO:0003723
Tsu01g03517 247 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 76 IPR000504 GO:0003723
Tsu01g03517 247 MobiDBLite consensus disorder prediction 82 108 - -
Tsu01g03517 247 CDD RRM2_SF2_plant_like 111 186 - -
Tsu01g03517 247 SUPERFAMILY RNA-binding domain, RBD 5 178 IPR035979 GO:0003676
Tsu01g03517 247 MobiDBLite consensus disorder prediction 87 104 - -
Tsu01g03517 247 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 82 IPR000504 GO:0003723
Tsu01g03517 247 SMART rrm1_1 112 181 IPR000504 GO:0003723
Tsu01g03517 247 SMART rrm1_1 8 78 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03517 Tsu-Chr1 43166466 43170086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03517 11 80 Eukaryotic Initiation Factors Gene Family AT3G11400 36.986 5.93e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03517 K12890 - gmx:100794282 333.569